macmanes-lab Oyster_River_Protocol issues

macmanes-lab / Oyster_River_Protocol

Official Repository of the Oyster River Protocol for Transcriptome Assembly

Creative Commons Zero v1.0 Universal

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issues

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The _salmon.XXXX.stderr file size balloons out of control

#50 jemcquillan opened 1 year ago
1
Make error

#49 Shokusei opened 2 years ago
1
ORP 2.3.3 with docker doesn't start

#48 marco91sol opened 2 years ago
1
Computation of the unique genes per assembly provided by the quality report

#47 olar785 opened 2 years ago
0
TransRate-ORP: Which modifications were made?

#46 lmuenter closed 3 years ago
2
Reduce orthofuse intermediate file count

#45 rmdickson opened 3 years ago
1
Issue with SPADES2/Kmer length

#44 chiroptera19 opened 3 years ago
1
sampledata test failed

#43 RyosukeKakehashi closed 3 years ago
2
ORP | Can handle single-end files

#42 RocesV opened 3 years ago
1
Empty file at Foo.list7

#41 evolscientist opened 4 years ago
0
orthofuser.mk run failure

#40 peterdfields opened 4 years ago
1
Several Samples for Assembly

#39 Hoberti opened 4 years ago
0
Add external assemblies to OrthFuse?

#38 santiagorevale opened 4 years ago
0
Orthofinder failure when running test dataset

#37 devonorourke opened 4 years ago
0
Installation and Usage questions

#36 santiagorevale opened 4 years ago
1
Run on singularity / without logging into container

#35 Shellfishgene opened 5 years ago
0
awk: program limit exceeded: maximum number of fields size=32767

#34 rafaeltiveron opened 5 years ago
2
Error during installation Python >=3.5

#33 rafaeltiveron opened 5 years ago
2
Error 141 on installation test

#32 mb492 opened 5 years ago
5
Fix BUSCO target

#31 AdamStuckert opened 5 years ago
0
Pipeline crashed at transabyss

#30 kokyriakidis opened 5 years ago
2
BUSCO datasets

#29 kokyriakidis opened 5 years ago
12
Add filtering by TPM and recovery via blast

#28 AdamStuckert opened 5 years ago
0
clarify trimming/cleaning

#27 AdamStuckert opened 5 years ago
0
Move salmon quantification snippet to be in order

#26 AdamStuckert opened 5 years ago
0
oyster.mk bug fix

#25 ToniWestbrook closed 5 years ago
0
Few updates and optimisation

#24 Medalibi closed 5 years ago
0
Error trinity partition

#23 rafaeltiveron closed 5 years ago
3
Unmatched reads in paired-end files

#22 rafaeltiveron opened 5 years ago
0
Fix BUSCO checkpointing

#21 AdamStuckert closed 5 years ago
0
Sample Data for test: Which is the correct result?

#20 rafaeltiveron closed 5 years ago
3
Verifying transaction: failed

#19 rafaeltiveron closed 5 years ago
3
"Error 1" possibly related to .newbies.fasta

#18 cooketho opened 5 years ago
3
READS ARE NOT AT LEAST 75 BP LONG error

#17 cooketho opened 5 years ago
2
PySlice_Unpack error

#16 cooketho opened 5 years ago
18
Some general questions

#15 santiagorevale closed 5 years ago
1
java memory issue

#14 karenbobier closed 5 years ago
2
assembly_procedure

#13 mamtamasand closed 5 years ago
3
minor directory fixes

#12 AdamStuckert closed 5 years ago
0
salmon sample quantification make file

#11 AdamStuckert closed 5 years ago
0
orthofuser overhaul and added functionality

#10 AdamStuckert closed 6 years ago
0
fails at Busco

#9 jpwares closed 5 years ago
4
add python 2.7 source

#8 AdamStuckert closed 6 years ago
0
make error -- software/anaconda/install/bin/conda: No such file or directory

#7 jfordonez closed 6 years ago
3
fix this to work on bridges

#6 macmanes closed 5 years ago
0
BLAST install fix

#5 ToniWestbrook closed 6 years ago
0
Update orthofuser.mk

#4 AdamStuckert closed 6 years ago
0
Protocol textual error

#3 peterdfields closed 8 years ago
1
split-paired-reads.py version

#2 peterdfields closed 8 years ago
9
Add a Gitter chat badge to README.md

#1 gitter-badger closed 8 years ago
0