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macroevolution / bamm

A program for multimodel inference on speciation and trait evolution
GNU General Public License v2.0
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Plot artifacts #98

Closed redcurry closed 10 years ago

redcurry commented 10 years ago

When I plot something using plot.bammdata, there's a tiny dot below the vertical line at the root. Also, after I use addBAMMshifts, the shifts are added properly, but when I resize the plot, the shifts are not in the correct location.

ptitle commented 10 years ago

I've noticed that dot too!

blueraleigh commented 10 years ago

I remember that dot. I recall making a change a long time ago that fixed it. It does not appear on my screen when I use plot.bammdata. Is anybody else experiencing this problem? addBAMMshifts resets the par variables before exiting and this causes the problem with window resizing. If you call addBAMMshifts with multi=TRUE, resizing the window should cause no problems for the relative positions of the points.

blueraleigh commented 10 years ago

Note that the argument "multi" changed to "par.reset" for greater clarity.

blueraleigh commented 10 years ago

Who still sees a dot? I cannot replicate this.

drabosky commented 10 years ago

i never could see the dot!

On Mar 4, 2014, at 11:01 AM, blueraleigh wrote:

Who still sees a dot? I cannot replicate this.

— Reply to this email directly or view it on GitHub.

redcurry commented 10 years ago

I still see it... I pulled today, ran R CMD BUILD BAMMtools, and then did R CMD INSTALL BAMMtools_1.0.tar.gz... That should have installed the latest version.

blueraleigh commented 10 years ago

Ahh, OK. It only appears when running R from Terminal, interesting.

blueraleigh commented 10 years ago

should be OK now