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macs3-project / MACS

MACS -- Model-based Analysis of ChIP-Seq
https://macs3-project.github.io/MACS/
BSD 3-Clause "New" or "Revised" License
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MACS2 default q-value cutoff #165

Open komalsrathi opened 7 years ago

komalsrathi commented 7 years ago

I am using MACS2 version: macs2 2.1.0.20150731. The documentation on macs2 --help says that the default q-value cut off is 0.05. But your documentation page here says it is 0.01. Can you clarify which is correct?

taoliu commented 7 years ago

Should be 0.05. I will fix the document soon.

Tao

On Dec 8, 2016, at 11:26 AM, Komal Rathi notifications@github.com wrote:

I am using MACS2 version: macs2 2.1.0.20150731. The documentation on macs2 --help says that the default q-value cut off is 0.05. But your documentation page here says it is 0.01. Can you clarify which is correct?

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