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macs3-project / MACS

MACS -- Model-based Analysis of ChIP-Seq
https://macs3-project.github.io/MACS/
BSD 3-Clause "New" or "Revised" License
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Bug: model.r file not readable in R Studio #472

Open subhajit-dutta-ngs opened 3 years ago

subhajit-dutta-ngs commented 3 years ago

Describe the bug I am using macs3 for peak calling in CUT&Tag data. But the output model.r files, when subjected to run using R studio, is giving error "Error: unexpected symbol in:".

To Reproduce macs3 callpeak -f BAM -t Merged_sorted_markdup.bam -c Mock_sorted_markdup.bam -g mm -p 0.01 -n Merged --keep-dup all --outdir ./MACS3Peaks

Expected behavior The model.r file is supposed to produce a pdf of data modelled. But it is giving a blank pdf. Screenshot from 2021-08-04 13-31-58 Screenshot from 2021-08-04 13-32-15

Screenshots If applicable, add screenshots to help explain your problem.

System (please complete the following information):

Additional context Merged_model.zip

kexiao-seu commented 2 years ago

Hi, I have met the same problem. it seems like that RStudio or RUI has their own limitations for vector length. Maybe you can run 'Rscript model.r' in command-line shell instead.

GENEDECODERS commented 2 years ago

I have met the same problem. it says Error Unexpected symbol in : both Xcorr and