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macs3-project
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MACS
MACS -- Model-based Analysis of ChIP-Seq
https://macs3-project.github.io/MACS/
BSD 3-Clause "New" or "Revised" License
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Q: lambda estimation
#608
pegahtak
opened
8 months ago
0
Q: What context should be specified for the 'gsize' option with killifish mapping data?
#607
LoganLHJ
opened
9 months ago
1
Bug: cython is required at build time but not install time
#606
tillea
closed
7 months ago
2
Bug: HMMRATAC --save-digested outputs four identical signal tracks
#605
mrendleman
closed
8 months ago
0
Q: question about the libmvec.so.1 error.
#604
Simple53
opened
10 months ago
5
Q: about the 'max-gap 'parameter
#603
liuyu988
opened
10 months ago
0
Q: the questions about calling broad peaks
#601
liuyu988
opened
10 months ago
0
Doc/macs3/jekyll equations
#600
philippadoherty
closed
10 months ago
1
Use of IDR after running MACS3 for ATAC-seq data
#599
OrangeyO2
closed
10 months ago
2
Bug: python3.12 incompatible due to numpy<1.24 restriction
#598
jowodo
closed
10 months ago
7
MACS3 3.0.0 official release with docs updated
#597
taoliu
closed
10 months ago
0
Bug: BEDPE Format input for hmmratac
#596
bcantarel
closed
7 months ago
3
Bug:
#595
XuJahcenia
opened
1 year ago
1
Bug: `LINK : fatal error LNK1181: cannot open input file 'm.lib'`
#594
danli349
opened
1 year ago
1
hmmratac adjust means and standard deviation
#593
LinearParadox
opened
1 year ago
5
gapped peak column 13 through 15
#592
ketakibhide
opened
1 year ago
1
Bug:
#591
david2905
closed
1 year ago
2
macs2: remove pip and wheel from build dependencies
#590
tjni
closed
1 year ago
1
remove pip and wheel from build dependencies
#589
tjni
closed
1 year ago
2
macs use the log() math function, but doesn't always link with libm.so.
#587
mr-c
closed
1 year ago
1
Q: Why peak region didn't appear with lower q-value than cut-off
#586
khsjh
opened
1 year ago
1
Q: multi sample comparison (scATAC)
#585
revolvefire
opened
1 year ago
0
Bug: MACS3 ZeroDivisionError: float division
#584
bsunbo
closed
7 months ago
2
Bug: Getting requirements to build wheel ... error
#583
bsunbo
closed
1 year ago
4
Q: how do slocal amd llocal work with open/closed chromatin domains?
#582
linpei26
opened
1 year ago
0
Feat: Support to output multiple output formats when using hmmratac mode
#581
ketakibhide
opened
1 year ago
0
Add option for `hmmratac` to use BEDPE files as input
#580
taoliu
closed
1 year ago
2
Cython 3.0 support
#579
taoliu
closed
1 year ago
0
Feat: Support for CRAM
#578
bcantarel
opened
1 year ago
4
Bug: Overly large fragment causes zeroDivision error while calculating weights for four signal tracks.
#577
taoliu
closed
1 year ago
2
MACS3 b3 update `hmmratac` and `Cython` issue
#576
taoliu
closed
1 year ago
0
Bug: MACS3 can't installed by pip
#574
dengyang111
closed
1 year ago
2
addresses #572, but could be more effective
#573
ggraham
closed
1 year ago
2
Two lines in Signal/PeakVariants.pyx causing installation errors
#572
franciskim-yonsei
closed
7 months ago
1
Q: What is recommended command line for ATAC-Seq peak calling with bams from Paired End data
#571
tamuanand
closed
1 year ago
1
Q: The number of peaks
#570
jinheeeeee
opened
1 year ago
0
Fixed build failing due to cython 3 being released
#569
jemajet
closed
1 year ago
1
No effect on output called peaks by tuning nomodel+shift+extsize
#567
linpei26
opened
1 year ago
0
NA
#566
BenxiaHu
closed
1 year ago
0
Hmmratac add training command
#565
philippadoherty
closed
1 year ago
1
Bug:
#564
lufuhao
opened
1 year ago
1
MACS3 3.0.0beta2
#563
taoliu
closed
1 year ago
1
Q: ChiP-seq of histone PTMs: Control Peaks not Aligned to Treatment Peaks
#562
capslockwizard
opened
1 year ago
0
Feat: xls output should have header line even if no peak has been detected
#561
dariober
opened
1 year ago
1
Build local bias track from control with paired-end mode
#560
xiaoxuanzhu
opened
1 year ago
1
Q: MACS - HMMRATAC - Index Out of Range
#559
spirpinias
closed
1 year ago
9
Bug: can't install macs3 in a virtual environment via pip
#558
yjhuh514
closed
1 year ago
1
Bug: pip --no-deps is ignored
#557
akhst7
closed
11 months ago
0
Q: MACS2 callpeak VS bdgdiff. How to trace back?
#556
TaehyungKwon
opened
1 year ago
0
Q: Error running macs3 callpeak
#554
bodhi84
opened
1 year ago
1
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