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macsy-models / TXSScan

Bacterial secretion systems and Type IV-filament models for MacsyFinder
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macsypy.error.MacsypyError: unable to parse model definition 'TXSScan/bacteria/diderm/T2SS' #3

Closed yayahoho1 closed 2 years ago

yayahoho1 commented 2 years ago

Hi, i used TXSScan-1.1.0 for my reasearch work, but i got the error:

macsypy.error.MacsypyError: unable to parse model definition 'TXSScan/bacteria/diderm/T2SS' : The model definition T2SS.xml has an unknown attribute 'multi_model' for a gene. Please fix the definition.

########### my Macsyfinder version:

Macsyfinder 2.0rc6 using:

  • Python 3.7.13 (default, Mar 29 2022, 02:18:16) [GCC 7.5.0]
  • NetworkX 2.6.3

MacsyFinder is distributed under the terms of the GNU General Public License (GPLv3). See the COPYING file for details.

If you use this software please cite: Abby SS, Néron B, Ménager H, Touchon M, Rocha EPC (2014) MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems. PLoS ONE 9(10): e110726. doi:10.1371/journal.pone.0110726

and don't forget to cite models used: macsydata cite

################

please help me to fix the issue.

Thank you in advance.

rdenise commented 2 years ago

Hi, it is because you need to use the more updated version of macsyfinder (Macsyfinder 2.0rc7 or above)

yayahoho1 commented 2 years ago

I updated the version of macsyfinder and it works well. Thanks for the help!

rdenise commented 2 years ago

You might also have an issue with the version Macsyfinder 2.0rc7 as it is explained on this issue of macsyfinder: https://github.com/gem-pasteur/macsyfinder/issues/52.