2 use singularity to run decoil

madagiurgiu25 / decoil-pre

Reconstruct ecDNA from long-read data using Decoil tool

BSD 3-Clause "New" or "Revised" License

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Closed madagiurgiu25 closed 3 months ago

madagiurgiu25 commented 3 months ago

make available decoil-pipeline (recommended) and decoil (advance usage)
allow to run decoil-pipeline in different modes: sv-only, sv-reconstruct, reconstruct-only
run decoil using singularity
update documentation