Phoenix file type support

[WLNORGREN]

I am using pymoogi on the following file types, here is an example of what I am trying to do. I am using the abfind algorithm with the following file types, the atmosphere is in phoenix format. Here is the .par file I am using:

abfind standard_out 'b' summary_out 'bb' model_in 'GJ3313.phx' lines_in 'GJ3313.lin' atmosphere 1 molecules 1 lines 1 flux/int 0 plot 0 terminal xterm abundances 1 1 29 0.0 damping 2

The name of this file is abgj3313.par, and the model atmosphere and line files are GJ3313.phx and GJ3313.lin, respectively. When I run pymoogi abfind_example.par, there are no issues. However, when I run pymoogi abgj3313.par , I get the following error message:

In addition, I have modified Inmodel.f to support the phoenix model atmosphere type as follows: Inmodelf.txt

Is it possible to use the phoenix model atmosphere type with pymoogi, or have I configured something incorrectly?

[madamow]

Form the quick look on your error, it seems like the problem is with the format of your output files. Could you send me an example of your output files? I can work on adjusting pymoogi to your case.

[WLNORGREN]

Hello Ms. Adamow,

Do you mean b and bb?

Thank you,

Wolf Norgren

On Fri, Apr 2, 2021 at 12:01 PM Monika Adamow @.***> wrote:

Form the quick look on your error, it seems like the problem is with the format of your output files. Could you send me an example of your output files? I can work on adjusting pymoogi to your case.

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[WLNORGREN]

Hello Ms. Adamow,

Thank you for helping me with this software!

Both me and my professor greatly appreciate pymoogi!

Thank you,

Wolf Norgren

On Fri, Apr 2, 2021 at 5:03 PM W Norgren @.***> wrote:

Hello Ms. Adamow,

Do you mean b and bb?

Thank you,

Wolf Norgren

On Fri, Apr 2, 2021 at 12:01 PM Monika Adamow @.***> wrote:

Form the quick look on your error, it seems like the problem is with the format of your output files. Could you send me an example of your output files? I can work on adjusting pymoogi to your case.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/madamow/pymoogi/issues/8#issuecomment-812617160, or unsubscribe https://github.com/notifications/unsubscribe-auth/ATP4Q7GCIDAD4DRVEHU2XPLTGXZ45ANCNFSM42JCLHBQ .

[madamow]

Yes, b and bb. I will start from there. It is Friday today, so I will probably contact you back early next week :) Thank you for using pymoogi!

[WLNORGREN]

Hello Ms. Adamow,

I have changed b and bb to eqw1 and eqw2. That seems to work!

Thank you for the help!

Is it OK if i contact you in the future about further pymoogi issues?

I am in an ongoing research project relating to stellar atmospheres.

Th

On Fri, Apr 2, 2021 at 12:07 PM Monika Adamow @.***> wrote:

Yes, b and bb. I will start from there. It is Friday today, so I will probably contact you back early next week :) Thank you for using pymoogi!

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[WLNORGREN]

Thank you,

Wolf Norgren

On Fri, Apr 2, 2021 at 12:12 PM W Norgren @.***> wrote:

Hello Ms. Adamow,

I have changed b and bb to eqw1 and eqw2. That seems to work!

Thank you for the help!

Is it OK if i contact you in the future about further pymoogi issues?

I am in an ongoing research project relating to stellar atmospheres.

Th

On Fri, Apr 2, 2021 at 12:07 PM Monika Adamow @.***> wrote:

Yes, b and bb. I will start from there. It is Friday today, so I will probably contact you back early next week :) Thank you for using pymoogi!

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[madamow]

I am happy that it worked. That is weird though that something depends on the name of the output files, so it is something I need to check. Please contact me about any issues with pymoogi, always happy to help!

[WLNORGREN]

Hello Ms. Adamow,

I had previously thought that changing the output names worked, but instead, it seems like I keep seeing the data for the example star, instead of the one I am trying to calculate the abundances for, when the output files are set to eqw1 and eqw2. What do you think I am doing wrong? I am still trying to use Phoenix model atmospheres.

Thank you,

Wolf Norgren

On Fri, Apr 2, 2021 at 12:16 PM Monika Adamow @.***> wrote:

I am happy that it worked. That is weird though that something depends on the name of the output files, so it is something I need to check. Please contact me about any issues with pymoogi, always happy to help!

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[madamow]

Ok, I will work on that. Could you please send me an example file with phoenix model?

[WLNORGREN]

Sure, here it is.

Hello Ms. Adamow,

Sorry for not getting back sooner.

The first screenshot is what I see when I first log in.

The second is the data for carbon for abfind_example.par The third is the data for abGJ3313.par, a star I am trying to examine.

In both cases, I run pymoogi, and the output is identical.

Is there anything I haven't configured correctly?

I am using eqw1 and eqw2 for the output files in both cases.

On Tue, Apr 27, 2021 at 12:00 PM Monika Adamow @.***> wrote:

Ok, I will work on that. Could you please send me an example file with phoenix model?

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[WLNORGREN]

Hello Ms. Adamow,

Here are the other two attachments.

Thank you,

Wolf Norgren

On Tue, Apr 27, 2021 at 2:24 PM W Norgren @.***> wrote:

Sure, here it is.

Hello Ms. Adamow,

Sorry for not getting back sooner.

The first screenshot is what I see when I first log in.

The second is the data for carbon for abfind_example.par The third is the data for abGJ3313.par, a star I am trying to examine.

In both cases, I run pymoogi, and the output is identical.

Is there anything I haven't configured correctly?

I am using eqw1 and eqw2 for the output files in both cases.

On Tue, Apr 27, 2021 at 12:00 PM Monika Adamow @.***> wrote:

Ok, I will work on that. Could you please send me an example file with phoenix model?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/madamow/pymoogi/issues/8#issuecomment-827763257, or unsubscribe https://github.com/notifications/unsubscribe-auth/ATP4Q7B2DKAIYYXKAKHKCWTTK3US3ANCNFSM42JCLHBQ .

[madamow]

I do not see attached files. Could you send them directly to my email? madamow[at]icloud.com

[madamow]

My guess is the new output files are not created, old eqw1 and eqw2 are read in instead. But to recreate the error I need input files, at least the phoenix model file.

[WLNORGREN]

Hello Ms. Adamow,

Here are the input files I used.

Thank you,

Wolf Norgren

On Tue, Apr 27, 2021 at 3:23 PM Monika Adamow @.***> wrote:

My guess is the new output files are not created, old eqw1 and eqw2 are read in instead. But to recreate the error I need input files, at least the phoenix model file.

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