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madhavsuresh / chimerascan

Automatically exported from code.google.com/p/chimerascan
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Indel and rearrangement calling #4

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
Single reads mapped as multiple segments may reveal indels and small 
rearrangements.  These can be detected by finding reads with split mappings to 
the same gene, but where the segment mappings are not contiguous.

It would be a relatively small task to add checks for these types of 
aberrations and report them as a complementary module to fusion discovery

Original issue reported on code.google.com by matthew....@gmail.com on 18 Jan 2011 at 12:57

GoogleCodeExporter commented 9 years ago 
Decided not to pursue this option.  Incorporation of gapped alignment tools is 
planned for a future release.

Original comment by matthew....@gmail.com on 4 Jul 2011 at 2:37