search

madhuneal / ppss

Automatically exported from code.google.com/p/ppss
0 stars 0 forks source link

cat: ppss-array-pointer: No such file or directory - ppss.sh failed #13

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
What steps will reproduce the problem?

1. Created an input file - 10M rows of text, 20 chars per row (called
Random20mers.txt 

2. ppss.sh standalone -f ./Random20mers.txt -c './screen2.sh "$ITEM" '

(screen2.sh is just a test script that echo's the $1 arg i.e. $ITEM) 

What is the expected output? What do you see instead?

Output on the console:

Apr 17 17:11:09: INFO  Currently 0 percent complete. Processed 107 of
10000000 items.
Apr 17 17:11:09: INFO  There are no more running jobs, so we must be finished.
Apr 17 17:11:10: INFO  Killing listener and remainig processes.108 of
10000000 items.
Apr 17 17:11:10: INFO  Dying processes may display an error message.
/Users/****/local/analysis/bin/ppss.sh: line 268: 12165 Terminated        
     listen_for_job "$MAX_NO_OF_RUNNING_JOBS"

tan**** tbeck$ cat: ppss-array-pointer: No such file or directory
/Users/****/local/analysis/bin/ppss.sh: line 1156: 100 *  / 10000000 :
syntax error: operand expected (error token is "/ 10000000 ")

What version of the product are you using? On what operating system?

PPSS 2.18, on OS X 10.5.6 and Debian .6.18-6-amd64 #1 SMP

Please provide any additional information below.

JOB_LOG contains many files with names that are rows from my input file
PPSS_LOCAL_OUTPUT contains many files with names that are rows from my
input file
PPSS-GLOBAL-LOCK is empty
PPSS_LOCAL_TMPDIR is empty

Original issue reported on code.google.com by timothy.beck@gmail.com on 17 Apr 2009 at 9:36

Attachments:

GoogleCodeExporter commented 9 years ago

Original comment by Louwrentius on 4 May 2009 at 9:19

GoogleCodeExporter commented 9 years ago 
Can you please supply the input file in zipped format somewhere? 

Based on the error report i can conclude that PPSS incorrectly thinks that 
there are no processes running 
anymore and it starts to kill itself. However, since there are still child 
processes running, that rely on the ppss-
array-pointer file, you get these error messages. 

I created a file with 10 milion lines of just 20 characters (not random) and 
although it takes a long time to load, 
does not give any errors.

Original comment by Louwrentius on 4 May 2009 at 9:44

GoogleCodeExporter commented 9 years ago

Original comment by Louwrentius on 5 Jun 2009 at 8:32