ppss uses as $ITEM its own log files and --no-recursion does not work

[GoogleCodeExporter]

What steps will reproduce the problem?
1. ppss -c 'java ownprogram "$ITEM" > "$ITEM".s1' -p 6 -d 
<hidden>/Desktop/masstest/genes/

What is the expected output? What do you see instead?
Expected to go through all files in folder(about 1000). This ends up to 60% 
ready and in log I can see that it is trying to run my own program to ppss 
files. So I guess there is some proglems with the $ITEM.

export PPSS_DIR=<hidden>/Desktop/

This will repair.

--no-recursion says that -d is deprecated

What version of the product are you using? On what operating system?
2.85. Ubuntu 10.04

Please provide any additional information below.

Original issue reported on code.google.com by mika.r.t...@gmail.com on 15 Mar 2011 at 12:47

[GoogleCodeExporter]

Original comment by Louwrentius on 16 Mar 2011 at 11:14

[GoogleCodeExporter]

Does this work ok?

ppss -d <hidden>/Desktop/masstest/genes/ -c 'java ownprogram "$ITEM" > 
"$ITEM".s1' -p 6 

Original comment by Louwrentius on 16 Mar 2011 at 11:33

[GoogleCodeExporter]

Original comment by Louwrentius on 25 Dec 2011 at 4:39

• Changed state: Invalid