The algorithm is imperfect and falls back into making "no-calls";
this results in some complex var file regions being processed in the
var_only=True condition but becoming a homozygous no-call, creating
erroneous output that violates the "variant only" expectation.
The algorithm is imperfect and falls back into making "no-calls"; this results in some complex var file regions being processed in the var_only=True condition but becoming a homozygous no-call, creating erroneous output that violates the "variant only" expectation.