Complete Genomics varfiles have two columns with the quantitative scores varScoreVAF and varScoreEAF, which are given whenever a position has an alternate allele (absent in full ref calls or no-calls).
These proposed changes simply add to the base code the optional ability to output and keep these scores into the gVCF/VCF if the user wants it.
Your base code is beautiful and elegant. I have learned many things while working with it.
Thanks for sharing
Complete Genomics varfiles have two columns with the quantitative scores varScoreVAF and varScoreEAF, which are given whenever a position has an alternate allele (absent in full ref calls or no-calls).
These proposed changes simply add to the base code the optional ability to output and keep these scores into the gVCF/VCF if the user wants it.
Your base code is beautiful and elegant. I have learned many things while working with it. Thanks for sharing