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madscatt / zazmol

Library for defining molecular objects to create simulation and analysis programs To install: python setup.py install dependencies: numpy, mocker
GNU General Public License v3.0
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subset testing bug #80

Closed madscatt closed 1 year ago

madscatt commented 1 year ago

This bug may be system specific (Debian one one machine, versus Ubuntu on genapp server).

====================================================================== ERROR: test_1CRN_mask_all (main.Test_intg_subset_Mask_get_dihedral_subset_mask) test a small protein (crambin)

Traceback (most recent call last): File "/home/curtisj/git_working_copies/zazmol/src/python/test_sasmol/test_subset/test_intg_subset_Mask_get_dihedral_subset_mask.py", line 331, in test_1CRN_mask_all result_farray = self.o.get_dihedral_subset_mask(flexible_residues,mtype) File "/home/curtisj/anaconda3/lib/python3.9/site-packages/sasmol/subset.py", line 102, in get_dihedral_subset_mask sasmol.mask.get_mask_array(farray, name, resid, flexible_residues, nresidues, mtype) File "/home/curtisj/anaconda3/lib/python3.9/site-packages/sasmol/mask.py", line 66, in get_mask_array return _mask.get_mask_array(farray, nname, resid, flexible_residues, nresidues, mtype) TypeError: list must contain strings

madscatt commented 1 year ago

https://stackoverflow.com/questions/48391926/python-swig-in-typemap-does-not-work

https://stackoverflow.com/questions/22487780/what-do-i-use-instead-of-pystring-asstring-when-loading-a-python-module-in-3-3

madscatt commented 1 year ago

Updated mask.i for python 3. Tests pass.