If chain A has missing residues at N and C terminals, fasta edit works well.
If chain B has missing residues at N and C terminals, the symptom is shown below.
Initial sequence of B = MFEQ---KYGMN where --- means a number of known residues.
I edited input pdb to have missing residues e.g., m at N terminal and mk at C terminal and generated a fasta file for B.
Then, the updated sequence of B = mMFEQ---KYGMnmk after submitting the fasta file for B. (C terminal residue become a missing residue!)
In addition, sequence of B became longer if the fasta for B is resubmitted.
B sequence after 2nd submission of same fasta file = mMFEQ---KYGMnmkmk
B sequence after 3rd submission of same fasta file = mMFEQ---KYGMnmkmkmk
These two weird results didn't happen for chain A.
This is observed in pdb with chain A & B.
If chain A has missing residues at N and C terminals, fasta edit works well. If chain B has missing residues at N and C terminals, the symptom is shown below.
Initial sequence of B = MFEQ---KYGMN where --- means a number of known residues.
I edited input pdb to have missing residues e.g., m at N terminal and mk at C terminal and generated a fasta file for B.
Then, the updated sequence of B = mMFEQ---KYGMnmk after submitting the fasta file for B. (C terminal residue become a missing residue!)
In addition, sequence of B became longer if the fasta for B is resubmitted. B sequence after 2nd submission of same fasta file = mMFEQ---KYGMnmkmk B sequence after 3rd submission of same fasta file = mMFEQ---KYGMnmkmkmk
These two weird results didn't happen for chain A.