The TAMC module needs an input filter

[StevenCHowell]

• [ ] create an input filter that parses and passes input to the TAMC module
• [ ] include simple tests
  • [ ] flags
  • [x] file existence
  • [ ] angle between 1-180 degrees
  • [ ] one or more flexible regions (but less than the number of resids)
  • [ ] return to previous structures >= 1
  • [ ] trial attempts >= 1
• [ ] include complex tests
  • [ ] valid selection syntax
  • [ ] segname is the correct molecule type: protein, B-DNA, RNA, etc.
  • [ ] segnames exist
  • [ ] resids exist
  • [ ] B-DNA selections include the same number of residues
  • [ ] for isopeptide bond, make sure that only a lysine residue is chosen as the flexible region (therefore it has to be a protein). Also, make sure the post is correct.

[StevenCHowell]

input_filter.certify_pdb_psf check for file existence