Many files that pass PDBScan that are reported to not have any missing residues fail in the creation of a PDB/PSF pair via psfgen. Here are two example PDBs (26.pdb 54.pdb) in a zip file.
Note the log error messages (in scaffold_builder.py) are the same:
2018-02-02 19:10:27,609 - scaffold_builder.py - select_specified_regions - 188 - WARNING - found no atoms using filter selection segname[i] in []
WARNING:pdbrx.pdbrx.scaffold_builder:found no atoms using filter selection segname[i] in []
Many files that pass PDBScan that are reported to not have any missing residues fail in the creation of a PDB/PSF pair via psfgen. Here are two example PDBs (26.pdb 54.pdb) in a zip file.
26_and_54_pdb.zip
And here are the PDBScan reports for these files:
26_and_54_pdbscan_html_files.zip
Note the log error messages (in scaffold_builder.py) are the same:
2018-02-02 19:10:27,609 - scaffold_builder.py - select_specified_regions - 188 - WARNING - found no atoms using filter selection segname[i] in [] WARNING:pdbrx.pdbrx.scaffold_builder:found no atoms using filter selection segname[i] in []