Closed rrydbirk closed 1 year ago
Running valiDrops(), I get several warnings for sparse-to-dense coercions. I traced it to these lines. However, scry::devianceFeatureSelection accepts sparse matrices.
https://github.com/madsen-lab/valiDrops/blob/803e6e5be0e94feced633ba3a0ac70f25f935bf3/R/expression_metrics.R#L69
https://github.com/madsen-lab/valiDrops/blob/8b7736ad070afe537a7f79e3d24a9bbeddae5c4b/R/label_dead.R#L166
Running valiDrops(), I get several warnings for sparse-to-dense coercions. I traced it to these lines. However, scry::devianceFeatureSelection accepts sparse matrices.
https://github.com/madsen-lab/valiDrops/blob/803e6e5be0e94feced633ba3a0ac70f25f935bf3/R/expression_metrics.R#L69
https://github.com/madsen-lab/valiDrops/blob/8b7736ad070afe537a7f79e3d24a9bbeddae5c4b/R/label_dead.R#L166