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madsjulia / Mads.jl

MADS: Model Analysis & Decision Support
http://mads.gitlab.io
GNU General Public License v3.0
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Warning: Package Mads : skipping update (dirty).... #11

Closed finmod closed 7 years ago

finmod commented 7 years ago

Starting a couple of days ago, the Windows Pkg.update() give the above warning for Mads. In addition Pkg.test("Mads") fails

"madsoutput" "madsservers" "madsup" "madswarn" "madswindows" "makearrayconditionalloglikelihood" "makearrayfunction" "makearrayloglikelihood" "makebigdt" "makebigdt!" "makecomputeconcentrations" "makedixonprice" "makedoublearrayfunction" "makelmfunctions" "makelocalsafunction" "makelogprior" "makemadscommandfunction" "makemadscommandfunctionandgradient" "makemadscommandgradient" "makemadsconditionalloglikelihood" "makemadsloglikelihood" "makemadsreusablefunction" "makemakearrayconditionalloglikelihood" "makepowell" "makerosenbrock" "makerotatedhyperellipsoid" "makesphere" "makesumsquares" "maxtorealmax!" "modelinformationcriteria" "modelruns" "modobsweights!" "modwellweights!" "montecarlo" "noplot" "obslineismatch" "of" "paramarray2dict" "paramdict2array" "parsemadsdata!" "parsenodenames" "partialof" "plotgrid" "plotmadsproblem" "plotmass" "plotmatches" "plotobsSAresults" "plotrobustnesscurves" "plotseries" "plotwellSAresults" "printSAresults" "printSAresults2" "pyyamlok" "quiet" "quietoff" "quieton" "readasciipredictions" "readjsonpredictions" "readobservations" "readyamlpredictions" "regexs2obs" "reload" "required" "resetmodelruns" "residuals" "reweighsamples" "rmdir" "rmfile" "rosenbrock" "runcmd" "runremote" "saltelli" "saltellibrute" "saltellibruteparallel" "saltelliparallel" "sampling" "savecalibrationresults" "savemadsfile" "savemcmcresults" "savesaltellirestart" "scatterplotsamples" "searchdir" "setallparamsoff!" "setallparamson!" "setdebuglevel" "setdefaultplotformat" "setdir" "setdynamicmodel" "setmadsinputfile" "setnewmadsfilename" "setobservationtargets!" "setobstime!" "setobsweights!" "setparamoff!" "setparamon!" "setparamsdistnormal!" "setparamsdistuniform!" "setparamsinit!" "setplotfileformat" "setprocs" "setseed" "settarget!" "settime!" "setverbositylevel" "setweight!" "setwellweights!" "showallparameters" "showobservations" "showparameters" "sinetransform" "sinetransformfunction" "sinetransformgradient" "spaghettiplot" "spaghettiplots" "sphericalcov" "sphericalvariogram" "sprintf" "status" "svrFeature" "svrOutput" "symlinkdir" "symlinkdirfiles" "tag" "test" "testj" "verbositylevel" "void2nan!" "weightedstats" "welloff!" "wellon!" "wells2observations!" "writeparameters" "writeparametersviatemplate" "yaml" INFO: BIGUQ functions: 15-element Array{Any,1}: "BIGUQ" "BigDT" "BigOED" "dataframeresults" "dobigoed" "generateproposedobs" "getfailureprobabilities" "getmcmcchain" "getrobustness" "getrobustnesscurve" "inbox" "makebigdts" "makedecision" "makedecisionforproposedobs" "printresults" INFO: Anasol functions: 22-element Array{Any,1}: "@code" "Anasol" "boundaryexpr" "boundarynames" "cinnerkernel" "dispersionnames" "dispersiontimedependenceexpr" "distributionexprs" "getboundaries" "getdispersions" "getinitdispersionfactor" "getsources" "inclosedinterval" "infinitedomainexpr" "innerkernel" "kernel" "maxnumberofdimensions" "quadgkwithtol" "retexpr" "sourcenames" "standardnormal" "symbolindex" INFO: ReusableFunctions functions: 3-element Array{Any,1}: "ReusableFunctions" "gethashfilename" "maker3function" INFO: MetaProgTools functions: 7-element Array{Any,1}: "MetaProgTools" "getsymbols" "in" "populateexpression" "populateexpression!" "replacesymbol" "replacesymbol!" INFO: RobustPmap functions: 4-element Array{Any,1}: "RobustPmap" "checkexceptions" "crpmap" "rpmap" INFO: Mads functions: 1-element Array{Any,1}: "createmadsproblem"INFO: Mads functions: 1-element Array{Any,1}: "loadmadsfile" Volume in drive C is OS Volume Serial Number is 0C4C-9799

Directory of C:\Users\Denis.julia\v0.5\Mads

22-Dec-16 01:03 PM

. 22-Dec-16 01:03 PM .. 10-Dec-16 06:40 PM 1,245 .gitignore 10-Dec-16 06:40 PM 546 .travis.yml 12-Oct-16 03:39 PM 357 ACKNOWLEDGMENTS.md 12-Oct-16 03:39 PM 1,446 COPYING.md 10-Dec-16 06:40 PM deps 26-Dec-16 11:42 AM docs 26-Dec-16 11:42 AM examples 12-Oct-16 03:39 PM 554 EXAMPLES.md 12-Oct-16 03:39 PM 370 FUNCTIONS.md 12-Oct-16 03:39 PM 4,169 GETTING_STARTED.md 12-Oct-16 03:39 PM 1,614 INSTALLATION.md 12-Oct-16 03:39 PM 35,821 LICENSE 12-Oct-16 03:39 PM logo 12-Oct-16 03:39 PM 1,975 MADS.md 23-Oct-16 10:05 AM 1,705 mkdocs.yml 12-Oct-16 03:39 PM 2,038 MODEL_COUPLING.md 12-Oct-16 03:39 PM 2,822 README.md 10-Dec-16 06:40 PM 291 REQUIRE 06-Nov-16 12:04 PM scripts 10-Dec-16 06:40 PM site 23-Dec-16 09:29 AM src 10-Dec-16 06:40 PM src-external 22-Dec-16 09:14 AM src-interactive 20-Dec-16 05:13 PM src-new 10-Dec-16 06:40 PM src-old 07-Jan-17 11:46 AM test 12-Oct-16 03:39 PM 597 TEST.md 15 File(s) 55,550 bytes 14 Dir(s) 223,631,298,560 bytes free WARNING: 2017-01-07 11:46:45 Requested format (TIFF) is not acceptable! (PNG|PDF|PS|SVG) WARNING: File mads.png is missing! ERROR: LoadError: LoadError: MethodError: no method matching push!(::Gadfly.Guide.##86#91, ::Tuple{Array{Compose.Context,1},Int64}) Closest candidates are: push!(::Any, ::Any, ::Any) at abstractarray.jl:1715 push!(::Any, ::Any, ::Any, ::Any...) at abstractarray.jl:1716 push!(::Array{Any,1}, ::ANY) at array.jl:486 ... in layout_guides(::Compose.Context, ::Gadfly.Coord.Cartesian, ::Gadfly.Theme, ::Gadfly.Guide.PositionedGuide, ::Vararg{Gadfly.Guide.PositionedGuide,N}) at C:\Users\Denis.julia\v0.5\Gadfly\src\guide.jl:1119 in #render_prepared#111(::Bool, ::Bool, ::Function, ::Gadfly.Plot, ::Gadfly.Coord.Cartesian, ::Gadfly.Aesthetics, ::Array{Gadfly.Aesthetics,1}, ::Array{Array{Gadfly.StatisticElement,1},1}, ::Array{Array{Gadfly.Aesthetics,1},1}, ::Array{Array{Gadfly.Data,1},1}, ::Dict{Symbol,Gadfly.ScaleElement}, ::Array{Gadfly.GuideElement,1}) at C:\Users\Denis.julia\v0.5\Gadfly\src\Gadfly.jl:901 in render_prepared(::Gadfly.Plot, ::Gadfly.Coord.Cartesian, ::Gadfly.Aesthetics, ::Array{Gadfly.Aesthetics,1}, ::Array{Array{Gadfly.StatisticElement,1},1}, ::Array{Array{Gadfly.Aesthetics,1},1}, ::Array{Array{Gadfly.Data,1},1}, ::Dict{Symbol,Gadfly.ScaleElement}, ::Array{Gadfly.GuideElement,1}) at C:\Users\Denis.julia\v0.5\Gadfly\src\Gadfly.jl:875 in render(::Gadfly.Plot) at C:\Users\Denis.julia\v0.5\Gadfly\src\Gadfly.jl:821 in copy!(::Array{Compose.Context,1}, ::Base.Generator{Tuple{Gadfly.Plot,Gadfly.Plot,Gadfly.Plot,Gadfly.Plot,Gadfly.Plot},Gadfly.#render}) at .\abstractarray.jl:477 in _collect(::Type{Compose.Context}, ::Base.Generator{Tuple{Gadfly.Plot,Gadfly.Plot,Gadfly.Plot,Gadfly.Plot,Gadfly.Plot},Gadfly.#render}, ::Base.HasLength) at .\array.jl:250 in vstack(::Gadfly.Plot, ::Gadfly.Plot, ::Gadfly.Plot, ::Gadfly.Plot, ::Vararg{Gadfly.Plot,N}) at C:\Users\Denis.julia\v0.5\Gadfly\src\Gadfly.jl:946 in #plotseries#296(::String, ::String, ::String, ::String, ::String, ::Bool, ::Function, ::Array{Float64,2}, ::String) at C:\Users\Denis.julia\v0.5\Mads\src\MadsPlot.jl:969 in (::Mads.#kw##plotseries)(::Array{Any,1}, ::Mads.#plotseries, ::Array{Float64,2}, ::String) at .\:0 in include_from_node1(::String) at .\loading.jl:488 (repeats 2 times) in process_options(::Base.JLOptions) at .\client.jl:262 in _start() at .\client.jl:318 while loading C:\Users\Denis.julia\v0.5\Mads\test\miscellaneous.jl, in expression starting on line 102 while loading C:\Users\Denis.julia\v0.5\Mads\test\runtests.jl, in expression starting on line 7 ================================[ ERROR: Mads ]=================================

failed process: Process('C:\Users\Denis\AppData\Local\Julia-0.5.0\bin\julia' -Cx86-64 '-JC:\Users\Denis\AppData\Local\Julia-0.5.0\lib\julia\sys.dll' --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=yes --compilecache=yes 'C:\Users\Denis\.julia\v0.5\Mads\test\runtests.jl', ProcessExited(1)) [1]

================================================================================ ERROR: Mads had test errors in #test#61(::Bool, ::Function, ::Array{AbstractString,1}) at .\pkg\entry.jl:740 in (::Base.Pkg.Entry.#kw##test)(::Array{Any,1}, ::Base.Pkg.Entry.#test, ::Array{AbstractString,1}) at .\:0 in (::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}})() at .\pkg\dir.jl:31 in cd(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}}, ::String) at .\file.jl:48 in #cd#1(::Array{Any,1}, ::Function, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at .\pkg\dir.jl:31 in (::Base.Pkg.Dir.#kw##cd)(::Array{Any,1}, ::Base.Pkg.Dir.#cd, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at .\:0 in #test#3(::Bool, ::Function, ::String, ::Vararg{String,N}) at .\pkg\pkg.jl:258 in test(::String, ::Vararg{String,N}) at .\pkg\pkg.jl:258

julia>

montyvesselinov commented 7 years ago

Unfortunately, there are issues with Gadfly. I can test it further.

finmod commented 7 years ago

Gadfly is still throwing numerous flags. Any chance of closing this issue?

montyvesselinov commented 7 years ago

Can you try again? Please do Pkg.update(); also make sure that use the latest Gadfly. Note that Gadlfy does not work in julia v0.6. But everything should be fine under 0.5.

finmod commented 7 years ago

Success on WSL ubuntu 16.04 and Vbox ubuntu 16.04. This clearly depends on using the master version of Gadfly and making sure that Pkg.test("Gadfly") passes all tests. This can take a while to get right. I have had problems with cairo and pango libraries. In the end with Pkg.checkout("Gadfly"), Pkg.test("Mads") passes all tests. All of this is with Julia 0.5.1

The same approach on Windows succeeds with Pkg.test("Gadfly"). Instead Pkg.test("Mads") running with Administrator status fails with SVR. So far, I have not found a way to Pkg.build("SVR") successfully.

montyvesselinov commented 7 years ago

I made some changes in SVR. Please try it again. SVR uses libsvm

https://www.csie.ntu.edu.tw/~cjlin/libsvm/

installation of libsvm needs g++

montyvesselinov commented 7 years ago

For Gadfly under Windows , you will need also to do

Pkg.add("Cairo") Pkg.add("Fontconfig")

Get the latest Mads (0.4.2) and hope it works now.

finmod commented 7 years ago

On Windows, almost there. This is the latest error report. There is a problem with file name:

Expression: Mads.getnextmadsfilename("a-v01.mads") == "./a-v03.mads" Evaluated: ".\a-v03.mads" == "./a-v03.mads" ERROR: LoadError: LoadError: There was an error during testing

"quietdefault" "quietoff" "quieton" "readasciipredictions" "readjsonpredictions" "readmodeloutput" "readobservations" "readyamlpredictions" "regexs2obs" "reload" "required" "resetmodelruns" "residuals" "restart" "restartoff" "restarton" "reweighsamples" "rmdir" "rmfile" "rosenbrock" "runcmd" "runremote" "saltelli" "saltellibrute" "saltellibruteparallel" "saltelliparallel" "sampling" "savecalibrationresults" "savemadsfile" "savemcmcresults" "savesaltellirestart" "scatterplotsamples" "searchdir" "setallparamsoff!" "setallparamson!" "setdebuglevel" "setdefaultplotformat" "setdir" "setdynamicmodel" "setmadsinputfile" "setmodelinputs" "setnewmadsfilename" "setobservationtargets!" "setobstime!" "setobsweights!" "setparamoff!" "setparamon!" "setparamsdistnormal!" "setparamsdistuniform!" "setparamsinit!" "setplotfileformat" "setprocs" "setseed" "settarget!" "settime!" "setverbositylevel" "setweight!" "setwellweights!" "showallparameters" "showobservations" "showparameters" "sinetransform" "sinetransformfunction" "sinetransformgradient" "spaghettiplot" "spaghettiplots" "sphericalcov" "sphericalvariogram" "sprintf" "status" "stdoutcaptureoff" "stdoutcaptureon" "svrFeature" "svrOutput" "symlinkdir" "symlinkdirfiles" "tag" "test" "testj" "transposematrix" "transposevector" "verbositylevel" "void2nan!" "weightedstats" "welloff!" "wellon!" "wells2observations!" "writeparameters" "writeparametersviatemplate" "yaml" INFO: Anasol functions: 22-element Array{Any,1}: "@code" "Anasol" "boundaryexpr" "boundarynames" "cinnerkernel" "dispersionnames" "dispersiontimedependenceexpr" "distributionexprs" "getboundaries" "getdispersions" "getinitdispersionfactor" "getsources" "inclosedinterval" "infinitedomainexpr" "innerkernel" "kernel" "maxnumberofdimensions" "quadgkwithtol" "retexpr" "sourcenames" "standardnormal" "symbolindex" INFO: AffineInvariantMCMC functions: 3-element Array{Any,1}: "AffineInvariantMCMC" "flattenmcmcarray" "sample" INFO: GeostatInversion functions: 15-element Array{Any,1}: "FDDerivatives" "FFTRF" "GeostatInversion" "LowRankCovMatrix" "PCGALowRankMatrix" "RandMatFact" "getxis" "pcga" "pcgadirect" "pcgadirectiteration!" "pcgalsqr" "pcgalsqriteration" "randsvdwithseed" "rga" "srga" INFO: BIGUQ functions: 15-element Array{Any,1}: "BIGUQ" "BigDT" "BigOED" "dataframeresults" "dobigoed" "generateproposedobs" "getfailureprobabilities" "getmcmcchain" "getrobustness" "getrobustnesscurve" "inbox" "makebigdts" "makedecision" "makedecisionforproposedobs" "printresults" INFO: ReusableFunctions functions: 13-element Array{Any,1}: "ReusableFunctions" "checkfunctionkeywords" "checkhashfilename" "getfunctionkeywords" "gethashfilename" "loadresultfile" "maker3function" "quiet" "quietoff" "quieton" "resetrestarts" "restarts" "saveresultfile" INFO: RobustPmap functions: 4-element Array{Any,1}: "RobustPmap" "checkexceptions" "crpmap" "rpmap" INFO: MetaProgTools functions: 7-element Array{Any,1}: "MetaProgTools" "getsymbols" "in" "populateexpression" "populateexpression!" "replacesymbol" "replacesymbol!" INFO: SVR functions: 16-element Array{Any,1}: "@cachedsym" "LINEAR" "POLY" "PRECOMPUTED" "RBF" "SIGMOID" "SVR" "freemodel" "liboutput" "mapnodes" "mapparam" "predict" "readlibsvmfile" "savemodel" "train" "verbosity" INFO: Mads functions: 1-element Array{Any,1}: "createmadsproblem"INFO: Mads functions: 1-element Array{Any,1}: "loadmadsfile" Volume in drive C is OS Volume Serial Number is 0C4C-9799

Directory of C:\Users\Denis.julia\v0.5\Mads

28-Mar-17 06:31 PM

. 28-Mar-17 06:31 PM .. 17-Mar-17 09:23 PM 187 .gitattributes 28-Mar-17 06:31 PM 1,248 .gitignore 17-Mar-17 09:23 PM 2,367 .gitlab-ci.yml 17-Mar-17 09:23 PM 537 .travis.yml 17-Mar-17 09:23 PM 357 ACKNOWLEDGMENTS.md 17-Mar-17 09:23 PM 1,446 COPYING.md 28-Mar-17 06:31 PM deps 28-Mar-17 06:31 PM docs 17-Mar-17 09:23 PM examples 17-Mar-17 09:23 PM 634 EXAMPLES.md 17-Mar-17 09:23 PM 403 FUNCTIONS.md 17-Mar-17 09:23 PM 4,173 GETTING_STARTED.md 17-Mar-17 09:23 PM 1,644 INSTALLATION.md 17-Mar-17 09:23 PM 35,821 LICENSE 17-Mar-17 09:23 PM logo 17-Mar-17 09:23 PM 2,125 MADS.md 28-Mar-17 06:31 PM 2,023 mkdocs.yml 17-Mar-17 09:23 PM 2,044 MODEL_COUPLING.md 17-Mar-17 09:23 PM notebooks 17-Mar-17 09:23 PM 3,319 README.md 17-Mar-17 09:23 PM 373 REQUIRE 17-Mar-17 09:23 PM scripts 28-Mar-17 06:31 PM site 28-Mar-17 06:31 PM src 18-Mar-17 11:45 AM src-external 28-Mar-17 06:31 PM src-interactive 24-Mar-17 11:53 PM src-new 28-Mar-17 06:31 PM src-old 31-Mar-17 01:54 PM test 17-Mar-17 09:23 PM 609 TEST.md 17 File(s) 59,310 bytes 15 Dir(s) 200,662,986,752 bytes free WARNING: 2017-03-31 13:54:30 Requested format (TIFF) is not acceptable! (PNG|PDF|PS|SVG) WARNING: File mads.png is missing! WARNING: Do not know how to open test.png WARNING: 2017-03-31 13:54:58 Keyword already ssdr exists INFO: Git status Mads ... ?? examples/anasol/mass_reduced.svg ?? examples/anasol/w01short-ax-2-spaghetti.svg ?? examples/anasol/w01short-match-w1a.svg ?? examples/anasol/w01short-match.svg ?? examples/anasol/w01short-vx-2-spaghetti.svg ?? test/finename_testing/ INFO: Git status Anasol ... INFO: Git status AffineInvariantMCMC ... INFO: Git status GeostatInversion ... INFO: Git status BIGUQ ... INFO: Git status ReusableFunctions ... INFO: Git status RobustPmap ... INFO: Git status MetaProgTools ... INFO: Git status SVR ... WARNING: Unknown parallel environment! WARNING: No processors found to add! INFO: Number of processors: 1 [1]

  • io ...
  • file naming ... Test Failed Expression: Mads.getnextmadsfilename("a-v01.mads") == "./a-v03.mads" Evaluated: ".\a-v03.mads" == "./a-v03.mads" ERROR: LoadError: LoadError: There was an error during testing in record(::Base.Test.FallbackTestSet, ::Base.Test.Fail) at .\test.jl:397 in do_test(::Base.Test.Returned, ::Expr) at .\test.jl:281 in include_from_node1(::String) at .\loading.jl:488 (repeats 2 times) in process_options(::Base.JLOptions) at .\client.jl:265 in _start() at .\client.jl:321 while loading C:\Users\Denis.julia\v0.5\Mads\test\filename.jl, in expression starting on line 8 while loading C:\Users\Denis.julia\v0.5\Mads\test\runtests.jl, in expression starting on line 13 ================================[ ERROR: Mads ]=================================

failed process: Process('C:\Users\Denis\AppData\Local\Julia-0.5.1\bin\julia' -Cx86-64 '-JC:\Users\Denis\AppData\Local\Julia-0.5.1\lib\julia\sys.dll' --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=yes --compilecache=yes 'C:\Users\Denis\.julia\v0.5\Mads\test\runtests.jl', ProcessExited(1)) [1]

================================================================================ ERROR: Mads had test errors in #test#61(::Bool, ::Function, ::Array{AbstractString,1}) at .\pkg\entry.jl:749 in (::Base.Pkg.Entry.#kw##test)(::Array{Any,1}, ::Base.Pkg.Entry.#test, ::Array{AbstractString,1}) at .\:0 in (::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}})() at .\pkg\dir.jl:31 in cd(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}}, ::String) at .\file.jl:48 in #cd#1(::Array{Any,1}, ::Function, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at .\pkg\dir.jl:31 in (::Base.Pkg.Dir.#kw##cd)(::Array{Any,1}, ::Base.Pkg.Dir.#cd, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at .\:0 in #test#3(::Bool, ::Function, ::String, ::Vararg{String,N}) at .\pkg\pkg.jl:258 in test(::String, ::Vararg{String,N}) at .\pkg\pkg.jl:258

julia>

montyvesselinov commented 7 years ago

Thank you very much for checking on this. Modified version! pushed.

-monty

On Fri, Mar 31, 2017 at 5:57 AM, finmod notifications@github.com wrote:

On Windows, almost there. This is the latest error report. There is a problem with file name:

Expression: Mads.getnextmadsfilename("a-v01.mads") == "./a-v03.mads" Evaluated: ".\a-v03.mads" == "./a-v03.mads" ERROR: LoadError: LoadError: There was an error during testing

"quietdefault" "quietoff" "quieton" "readasciipredictions" "readjsonpredictions" "readmodeloutput" "readobservations" "readyamlpredictions" "regexs2obs" "reload" "required" "resetmodelruns" "residuals" "restart" "restartoff" "restarton" "reweighsamples" "rmdir" "rmfile" "rosenbrock" "runcmd" "runremote" "saltelli" "saltellibrute" "saltellibruteparallel" "saltelliparallel" "sampling" "savecalibrationresults" "savemadsfile" "savemcmcresults" "savesaltellirestart" "scatterplotsamples" "searchdir" "setallparamsoff!" "setallparamson!" "setdebuglevel" "setdefaultplotformat" "setdir" "setdynamicmodel" "setmadsinputfile" "setmodelinputs" "setnewmadsfilename" "setobservationtargets!" "setobstime!" "setobsweights!" "setparamoff!" "setparamon!" "setparamsdistnormal!" "setparamsdistuniform!" "setparamsinit!" "setplotfileformat" "setprocs" "setseed" "settarget!" "settime!" "setverbositylevel" "setweight!" "setwellweights!" "showallparameters" "showobservations" "showparameters" "sinetransform" "sinetransformfunction" "sinetransformgradient" "spaghettiplot" "spaghettiplots" "sphericalcov" "sphericalvariogram" "sprintf" "status" "stdoutcaptureoff" "stdoutcaptureon" "svrFeature" "svrOutput" "symlinkdir" "symlinkdirfiles" "tag" "test" "testj" "transposematrix" "transposevector" "verbositylevel" "void2nan!" "weightedstats" "welloff!" "wellon!" "wells2observations!" "writeparameters" "writeparametersviatemplate" "yaml" INFO: Anasol functions: 22-element Array{Any,1}: "@code https://github.com/code" "Anasol" "boundaryexpr" "boundarynames" "cinnerkernel" "dispersionnames" "dispersiontimedependenceexpr" "distributionexprs" "getboundaries" "getdispersions" "getinitdispersionfactor" "getsources" "inclosedinterval" "infinitedomainexpr" "innerkernel" "kernel" "maxnumberofdimensions" "quadgkwithtol" "retexpr" "sourcenames" "standardnormal" "symbolindex" INFO: AffineInvariantMCMC functions: 3-element Array{Any,1}: "AffineInvariantMCMC" "flattenmcmcarray" "sample" INFO: GeostatInversion functions: 15-element Array{Any,1}: "FDDerivatives" "FFTRF" "GeostatInversion" "LowRankCovMatrix" "PCGALowRankMatrix" "RandMatFact" "getxis" "pcga" "pcgadirect" "pcgadirectiteration!" "pcgalsqr" "pcgalsqriteration" "randsvdwithseed" "rga" "srga" INFO: BIGUQ functions: 15-element Array{Any,1}: "BIGUQ" "BigDT" "BigOED" "dataframeresults" "dobigoed" "generateproposedobs" "getfailureprobabilities" "getmcmcchain" "getrobustness" "getrobustnesscurve" "inbox" "makebigdts" "makedecision" "makedecisionforproposedobs" "printresults" INFO: ReusableFunctions functions: 13-element Array{Any,1}: "ReusableFunctions" "checkfunctionkeywords" "checkhashfilename" "getfunctionkeywords" "gethashfilename" "loadresultfile" "maker3function" "quiet" "quietoff" "quieton" "resetrestarts" "restarts" "saveresultfile" INFO: RobustPmap functions: 4-element Array{Any,1}: "RobustPmap" "checkexceptions" "crpmap" "rpmap" INFO: MetaProgTools functions: 7-element Array{Any,1}: "MetaProgTools" "getsymbols" "in" "populateexpression" "populateexpression!" "replacesymbol" "replacesymbol!" INFO: SVR functions: 16-element Array{Any,1}: "@cachedsym" "LINEAR" "POLY" "PRECOMPUTED" "RBF" "SIGMOID" "SVR" "freemodel" "liboutput" "mapnodes" "mapparam" "predict" "readlibsvmfile" "savemodel" "train" "verbosity" INFO: Mads functions: 1-element Array{Any,1}: "createmadsproblem"INFO: Mads functions: 1-element Array{Any,1}: "loadmadsfile" Volume in drive C is OS Volume Serial Number is 0C4C-9799

Directory of C:\Users\Denis.julia\v0.5\Mads

28-Mar-17 06:31 PM . 28-Mar-17 06:31 PM .. 17-Mar-17 09:23 PM 187 .gitattributes 28-Mar-17 06:31 PM 1,248 .gitignore 17-Mar-17 09:23 PM 2,367 .gitlab-ci.yml 17-Mar-17 09:23 PM 537 .travis.yml 17-Mar-17 09:23 PM 357 ACKNOWLEDGMENTS.md 17-Mar-17 09:23 PM 1,446 COPYING.md 28-Mar-17 06:31 PM deps 28-Mar-17 06:31 PM docs 17-Mar-17 09:23 PM examples 17-Mar-17 09:23 PM 634 EXAMPLES.md 17-Mar-17 09:23 PM 403 FUNCTIONS.md 17-Mar-17 09:23 PM 4,173 GETTING_STARTED.md 17-Mar-17 09:23 PM 1,644 INSTALLATION.md 17-Mar-17 09:23 PM 35,821 LICENSE 17-Mar-17 09:23 PM logo 17-Mar-17 09:23 PM 2,125 MADS.md 28-Mar-17 06:31 PM 2,023 mkdocs.yml 17-Mar-17 09:23 PM 2,044 MODEL_COUPLING.md 17-Mar-17 09:23 PM notebooks 17-Mar-17 09:23 PM 3,319 README.md 17-Mar-17 09:23 PM 373 REQUIRE 17-Mar-17 09:23 PM scripts 28-Mar-17 06:31 PM site 28-Mar-17 06:31 PM src 18-Mar-17 11:45 AM src-external 28-Mar-17 06:31 PM src-interactive 24-Mar-17 11:53 PM src-new 28-Mar-17 06:31 PM src-old 31-Mar-17 01:54 PM test 17-Mar-17 09:23 PM 609 TEST.md 17 File(s) 59,310 bytes 15 Dir(s) 200,662,986,752 bytes free WARNING: 2017-03-31 13:54:30 Requested format (TIFF) is not acceptable! (PNG|PDF|PS|SVG) WARNING: File mads.png is missing! WARNING: Do not know how to open test.png WARNING: 2017-03-31 13:54:58 Keyword already ssdr exists INFO: Git status Mads ... ?? examples/anasol/mass_reduced.svg ?? examples/anasol/w01short-ax-2-spaghetti.svg ?? examples/anasol/w01short-match-w1a.svg ?? examples/anasol/w01short-match.svg ?? examples/anasol/w01short-vx-2-spaghetti.svg ?? test/finename_testing/ INFO: Git status Anasol ... INFO: Git status AffineInvariantMCMC ... INFO: Git status GeostatInversion ... INFO: Git status BIGUQ ... INFO: Git status ReusableFunctions ... INFO: Git status RobustPmap ... INFO: Git status MetaProgTools ... INFO: Git status SVR ... WARNING: Unknown parallel environment! WARNING: No processors found to add! INFO: Number of processors: 1 [1]

  • io ...
  • file naming ... Test Failed Expression: Mads.getnextmadsfilename("a-v01.mads") == "./a-v03.mads" Evaluated: ".\a-v03.mads" == "./a-v03.mads" ERROR: LoadError: LoadError: There was an error during testing in record(::Base.Test.FallbackTestSet, ::Base.Test.Fail) at .\test.jl:397 in do_test(::Base.Test.Returned, ::Expr) at .\test.jl:281 in include_from_node1(::String) at .\loading.jl:488 (repeats 2 times) in process_options(::Base.JLOptions) at .\client.jl:265 in _start() at .\client.jl:321 while loading C:\Users\Denis.julia\v0.5\Mads\test\filename.jl, in expression starting on line 8 while loading C:\Users\Denis.julia\v0.5\Mads\test\runtests.jl, in expression starting on line 13 ================================[ ERROR: Mads ]=================================

failed process: Process('C:\Users\Denis\AppData\Local\Julia-0.5.1\bin\julia' -Cx86-64 '-JC:\Users\Denis\AppData\Local\Julia-0.5.1\lib\julia\sys.dll' --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=yes --compilecache=yes 'C:\Users\Denis.julia\v0.5\ Mads\test\runtests.jl', ProcessExited(1)) [1]

============================================================

ERROR: Mads had test errors in #test#61(::Bool, ::Function, ::Array{AbstractString,1}) at .\pkg\entry.jl:749 in (::Base.Pkg.Entry.#kw##test)(::Array{Any,1}, ::Base.Pkg.Entry.#test, ::Array{AbstractString,1}) at .:0 in (::Base.Pkg.Dir.##2 https://github.com/madsjulia/Mads.jl/pull/2

3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}})()

at .\pkg\dir.jl:31 in cd(::Base.Pkg.Dir.##2 https://github.com/madsjulia/Mads.jl/pull/2

3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}},

::String) at .\file.jl:48 in #cd#1(::Array{Any,1}, ::Function, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at .\pkg\dir.jl:31 in (::Base.Pkg.Dir.#kw##cd)(::Array{Any,1}, ::Base.Pkg.Dir.#cd, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at .:0 in #test#3(::Bool, ::Function, ::String, ::Vararg{String,N}) at .\pkg\pkg.jl:258 in test(::String, ::Vararg{String,N}) at .\pkg\pkg.jl:258

julia>

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