Getting problems when running package tests.

[AIAdventures]

"allwellson!"
"amanzi"
"asinetransform"
"bayessampling"
"calibrate"
"calibraterandom"
"checkmodeloutputdirs"
"checkout"
"checkparameterranges"
"cleancoverage"
"commit"
"computemass"
"computeparametersensitities"
"contamination"
"copyright"
"createmadsproblem"
"createobservations!"
"createtempdir"
"debuglevel"
"deleteNaN!"
"deletekeyword!"
"dependents"
"display"
"dobigdt"
"documentfunction"
"dpi"
"dumpasciifile"
"dumpjsonfile"
"dumpwelldata"
"dumpyamlfile"
"dumpyamlmadsfile"
"efast"
"emceesampling"
"estimationerror"
"expcov"
"exponentialvariogram"
"filterkeys"
"forward"
"forwardgrid"
"free"
"funcname"
"functions"
"gaussiancov"
"gaussianvariogram"
"getcovmat"
"getcovvec!"
"getdictvalues"
"getdir"
"getdistribution"
"getextension"
"getfunction"
"getfunctionarguments"
"getfunctionkeywords"
"getimportantsamples"
"getlogparamkeys"
"getmadsdir"
"getmadsinputfile"
"getmadsproblemdir"
"getmadsrootname"
"getnextmadsfilename"
"getnonlogparamkeys"
"getnonoptparamkeys"
"getobsaltnames"
"getobsdefault"
"getobsdist"
"getobskeys"
"getobslog"
"getobslogdefault"
"getobsmax"
"getobsmin"
"getobsnames"
"getobstarget"
"getobstime"
"getobstypes"
"getobsweight"
"getoptparamkeys"
"getoptparams"
"getparamdict"
"getparamdistributions"
"getparamkeys"
"getparamrandom"
"getparamsdefault"
"getparamsinit"
"getparamslog"
"getparamslogdefault"
"getparamslongname"
"getparamsmax"
"getparamsmin"
"getparamsnames"
"getparamsplotname"
"getparamsstep"
"getparamstype"
"getparamstypes"
"getprocs"
"getrestart"
"getrestartdir"
"getrootname"
"getsindx"
"getsourcekeys"
"gettarget"
"gettargetkeys"
"gettime"
"getweight"
"getwellkeys"
"getwellsdata"
"graphbackend"
"graphoff"
"graphon"
"graphoutput"
"haskeyword"
"help"
"importeverywhere"
"index"
"indexkeys"
"instline2regexs"
"invobsweights!"
"invwellweights!"
"islog"
"isobs"
"isopt"
"isparam"
"ispkgavailable"
"keywordname"
"keywordvalsNOT"
"krige"
"linktempdir"
"loadasciifile"
"loadjsonfile"
"loadmadsfile"
"loadsaltellirestart!"
"loadyamlfile"
"localsa"
"madsbash"
"madscores"
"madscritical"
"madsdebug"
"madsdir"
"madserror"
"madsgit"
"madsinfo"
"madsinputfile"
"madsload"
"madsmathprogbase"
"madsmodules"
"madsoutput"
"madsservers"
"madsup"
"madswarn"
"makearrayconditionalloglikelihood" "makearrayfunction"
"makearrayloglikelihood"
"makebigdt"
"makebigdt!"
"makecomputeconcentrations"
"makedixonprice"
"makedoublearrayfunction"
"makelmfunctions"
"makelocalsafunction"
"makelogprior"
"makemadscommandfunction"
"makemadscommandfunctionandgradient" "makemadscommandgradient"
"makemadsconditionalloglikelihood"
"makemadsloglikelihood"
"makemadsreusablefunction"
"makempbfunctions"
"makepowell"
"makerosenbrock"
"makerotatedhyperellipsoid"
"makesphere"
"makesumsquares"
"maxtorealmax!"
"meshgrid"
"mkdir"
"modelinformationcriteria"
"modelruns"
"modobsweights!"
"modwellweights!"
"montecarlo"
"noplot"
"obslineismatch"
"of"
"outputoriginal"
"outputread"
"outputreader"
"outputwrite"
"paramarray2dict"
"paramdict2array"
"parsemadsdata!"
"parsenodenames"
"partialof"
"plotgrid"
"plotmadsproblem"
"plotmass"
"plotmatches"
"plotobsSAresults"
"plotrobustnesscurves"
"plotseries"
"plotwellSAresults"
"printSAresults"
"printSAresults2"
"printerrormsg"
"push"
"pyyamlok"
"quiet"
"quietdefault"
"quietoff"
"quieton"
"readasciipredictions"
"readjsonpredictions"
"readmodeloutput"
"readobservations"
"readyamlpredictions"
"regexs2obs"
"reload"
"removesource!"
"removesourceparameters!"
"required"
"resetmodelruns"
"residuals"
"restart"
"restartoff"
"restarton"
"reweighsamples"
"rmdir"
"rmfile"
"rosenbrock"
"runcmd"
"runremote"
"saltelli"
"saltellibrute"
"saltellibruteparallel"
"saltelliparallel"
"sampling"
"savecalibrationresults"
"savemadsfile"
"savemcmcresults"
"savesaltellirestart"
"scatterplotsamples"
"searchdir"
"setallparamsoff!"
"setallparamson!"
"setdebuglevel"
"setdefaultplotformat"
"setdir"
"setdynamicmodel"
"setmadsinputfile"
"setmodelinputs"
"setnewmadsfilename"
"setobservationtargets!"
"setobstime!"
"setobsweights!"
"setparamoff!"
"setparamon!"
"setparamsdistnormal!"
"setparamsdistuniform!"
"setparamsinit!"
"setplotfileformat"
"setprocs"
"setseed"
"settarget!"
"settime!"
"setverbositylevel"
"setweight!"
"setwellweights!"
"showallparameters"
"showobservations"
"showparameters"
"sinetransform"
"sinetransformfunction"
"sinetransformgradient"
"spaghettiplot"
"spaghettiplots"
"sphericalcov"
"sphericalvariogram"
"sprintf"
"status"
"stdoutcaptureoff"
"stdoutcaptureon"
"svrFeature"
"svrOutput"
"symlinkdir"
"symlinkdirfiles"
"tag"
"test"
"testj"
"transposematrix"
"transposevector"
"verbositylevel"
"void2nan!"
"weightedstats"
"welloff!"
"wellon!"
"wells2observations!"
"writeparameters"
"writeparametersviatemplate"
"yaml" INFO: Anasol functions: 22-element Array{Any,1}: "@code"
"Anasol"
"boundaryexpr"
"boundarynames"
"cinnerkernel"
"dispersionnames"
"dispersiontimedependenceexpr" "distributionexprs"
"getboundaries"
"getdispersions"
"getinitdispersionfactor"
"getsources"
"inclosedinterval"
"infinitedomainexpr"
"innerkernel"
"kernel"
"maxnumberofdimensions"
"quadgkwithtol"
"retexpr"
"sourcenames"
"standardnormal"
"symbolindex" INFO: AffineInvariantMCMC functions: 3-element Array{Any,1}: "AffineInvariantMCMC" "flattenmcmcarray"
"sample" INFO: GeostatInversion functions: 15-element Array{Any,1}: "FDDerivatives"
"FFTRF"
"GeostatInversion"
"LowRankCovMatrix"
"PCGALowRankMatrix"
"RandMatFact"
"getxis"
"pcga"
"pcgadirect"
"pcgadirectiteration!" "pcgalsqr"
"pcgalsqriteration"
"randsvdwithseed"
"rga"
"srga" INFO: BIGUQ functions: 15-element Array{Any,1}: "BIGUQ"
"BigDT"
"BigOED"
"dataframeresults"
"dobigoed"
"generateproposedobs"
"getfailureprobabilities"
"getmcmcchain"
"getrobustness"
"getrobustnesscurve"
"inbox"
"makebigdts"
"makedecision"
"makedecisionforproposedobs" "printresults" INFO: ReusableFunctions functions: 15-element Array{Any,1}: "ReusableFunctions"
"checkfunctionkeywords" "checkhashfilename"
"computes"
"getfunctionkeywords"
"gethashfilename"
"loadresultfile"
"maker3function"
"quiet"
"quietoff"
"quieton"
"resetcomputes"
"resetrestarts"
"restarts"
"saveresultfile" INFO: RobustPmap functions: 4-element Array{Any,1}: "RobustPmap"
"checkexceptions" "crpmap"
"rpmap" INFO: MetaProgTools functions: 7-element Array{Any,1}: "MetaProgTools"
"getsymbols"
"in"
"populateexpression" "populateexpression!" "replacesymbol"
"replacesymbol!" INFO: SVR functions: 18-element Array{Any,1}: "@cachedsym"
"LINEAR"
"POLY"
"PRECOMPUTED"
"RBF"
"SIGMOID"
"SVR"
"freemodel"
"liboutput"
"loadmodel"
"mapnodes"
"mapparam"
"predict"
"readlibsvmfile" "savemodel"
"svmmodel"
"train"
"verbosity" INFO: Mads functions: 1-element Array{Any,1}: "createmadsproblem"INFO: Mads functions: 1-element Array{Any,1}: "loadmadsfile"WARNING: 2017-05-16 23:15:23 Requested format (TIFF) is not acceptable! (PNG|PDF|PS|SVG) WARNING: File mads.png is missing! filename = "test.png" Couldn't get a file descriptor referring to the console WARNING: 2017-05-16 23:16:02 Keyword ssdr already exists INFO: Git status Mads ... INFO: Git status Anasol ... INFO: Git status AffineInvariantMCMC ... INFO: Git status GeostatInversion ... INFO: Git status BIGUQ ... INFO: Git status ReusableFunctions ... INFO: Git status RobustPmap ... INFO: Git status MetaProgTools ... INFO: Git status SVR ... WARNING: Unknown parallel environment! WARNING: No processors found to add! INFO: Number of processors: 1 [1]

• io ... ERROR: LoadError: LoadError: PyError (:PyObject_Call) <class 'TypeError'> TypeError('cannot use a string pattern on a bytes-like object',) File "/home/andrewcz/miniconda3/lib/python3.5/site-packages/yaml/init.py", line 70, in load loader = Loader(stream) File "/home/andrewcz/miniconda3/lib/python3.5/site-packages/yaml/loader.py", line 34, in init Reader.init(self, stream) File "/home/andrewcz/miniconda3/lib/python3.5/site-packages/yaml/reader.py", line 85, in init self.determine_encoding() File "/home/andrewcz/miniconda3/lib/python3.5/site-packages/yaml/reader.py", line 135, in determine_encoding self.update(1) File "/home/andrewcz/miniconda3/lib/python3.5/site-packages/yaml/reader.py", line 169, in update self.check_printable(data) File "/home/andrewcz/miniconda3/lib/python3.5/site-packages/yaml/reader.py", line 139, in check_printable match = self.NON_PRINTABLE.search(data)

  in pyerr_check at /home/andrewcz/.julia/v0.5/PyCall/src/exception.jl:56 [inlined] in pyerr_check at /home/andrewcz/.julia/v0.5/PyCall/src/exception.jl:61 [inlined] in macro expansion at /home/andrewcz/.julia/v0.5/PyCall/src/exception.jl:81 [inlined] in #_pycall#66(::Array{Any,1}, ::Function, ::PyCall.PyObject, ::IOStream, ::Vararg{IOStream,N}) at /home/andrewcz/.julia/v0.5/PyCall/src/PyCall.jl:549 in _pycall(::PyCall.PyObject, ::IOStream, ::Vararg{IOStream,N}) at /home/andrewcz/.julia/v0.5/PyCall/src/PyCall.jl:537 in #pycall#70(::Array{Any,1}, ::Function, ::PyCall.PyObject, ::Type{PyCall.PyAny}, ::IOStream, ::Vararg{IOStream,N}) at /home/andrewcz/.julia/v0.5/PyCall/src/PyCall.jl:571 in pycall(::PyCall.PyObject, ::Type{PyCall.PyAny}, ::IOStream, ::Vararg{IOStream,N}) at /home/andrewcz/.julia/v0.5/PyCall/src/PyCall.jl:571 in #call#71(::Array{Any,1}, ::PyCall.PyObject, ::IOStream, ::Vararg{IOStream,N}) at /home/andrewcz/.julia/v0.5/PyCall/src/PyCall.jl:574 in #loadyamlfile#41(::Bool, ::Function, ::String) at /home/andrewcz/.julia/v0.5/Mads/src/MadsYAML.jl:23 in loadyamlfile(::String) at /home/andrewcz/.julia/v0.5/Mads/src/MadsYAML.jl:17 in include_from_node1(::String) at ./loading.jl:488 (repeats 2 times) in process_options(::Base.JLOptions) at ./client.jl:265 in _start() at ./client.jl:321 while loading /home/andrewcz/.julia/v0.5/Mads/test/io.jl, in expression starting on line 19 while loading /home/andrewcz/.julia/v0.5/Mads/test/runtests.jl, in expression starting on line 10 ================================[ ERROR: Mads ]=================================

failed process: Process(/usr/bin/julia -Cx86-64 -J/usr/lib/x86_64-linux-gnu/julia/sys.so --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=yes --compilecache=yes /home/andrewcz/.julia/v0.5/Mads/test/runtests.jl, ProcessExited(1)) [1]

================================================================================ ERROR: Mads had test errors in #test#61(::Bool, ::Function, ::Array{AbstractString,1}) at ./pkg/entry.jl:748 in (::Base.Pkg.Entry.#kw##test)(::Array{Any,1}, ::Base.Pkg.Entry.#test, ::Array{AbstractString,1}) at ./:0 in (::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}})() at ./pkg/dir.jl:31 in cd(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}}, ::String) at ./file.jl:59 in #cd#1(::Array{Any,1}, ::Function, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at ./pkg/dir.jl:31 in (::Base.Pkg.Dir.#kw##cd)(::Array{Any,1}, ::Base.Pkg.Dir.#cd, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at ./:0 in #test#3(::Bool, ::Function, ::String, ::Vararg{String,N}) at ./pkg/pkg.jl:258 in test(::String, ::Vararg{String,N}) at ./pkg/pkg.jl:258

julia>

[AIAdventures]

really interested in the package

[AIAdventures]

trying to run the tests.

[montyvesselinov]

There seems to be a problem with PyCall; can you test it Pkg.test("PyCall")

[AIAdventures]

julia> include(Mads.madsdir * "/../examples/contamination/contamination.jl") ERROR: LoadError: PyError (:PyObject_Call) <class 'TypeError'> TypeError('cannot use a string pattern on a bytes-like object',) File "/home/andrewcz/miniconda3/lib/python3.5/site-packages/yaml/init.py", line 70, in load loader = Loader(stream) File "/home/andrewcz/miniconda3/lib/python3.5/site-packages/yaml/loader.py", line 34, in init Reader.init(self, stream) File "/home/andrewcz/miniconda3/lib/python3.5/site-packages/yaml/reader.py", line 85, in init self.determine_encoding() File "/home/andrewcz/miniconda3/lib/python3.5/site-packages/yaml/reader.py", line 135, in determine_encoding self.update(1) File "/home/andrewcz/miniconda3/lib/python3.5/site-packages/yaml/reader.py", line 169, in update self.check_printable(data) File "/home/andrewcz/miniconda3/lib/python3.5/site-packages/yaml/reader.py", line 139, in check_printable match = self.NON_PRINTABLE.search(data)

in pyerr_check at /home/andrewcz/.julia/v0.5/PyCall/src/exception.jl:56 [inlined] in pyerr_check at /home/andrewcz/.julia/v0.5/PyCall/src/exception.jl:61 [inlined] in macro expansion at /home/andrewcz/.julia/v0.5/PyCall/src/exception.jl:81 [inlined] in #_pycall#66(::Array{Any,1}, ::Function, ::PyCall.PyObject, ::IOStream, ::Vararg{IOStream,N}) at /home/andrewcz/.julia/v0.5/PyCall/src/PyCall.jl:549 in _pycall(::PyCall.PyObject, ::IOStream, ::Vararg{IOStream,N}) at /home/andrewcz/.julia/v0.5/PyCall/src/PyCall.jl:537 in #pycall#70(::Array{Any,1}, ::Function, ::PyCall.PyObject, ::Type{PyCall.PyAny}, ::IOStream, ::Vararg{IOStream,N}) at /home/andrewcz/.julia/v0.5/PyCall/src/PyCall.jl:571 in pycall(::PyCall.PyObject, ::Type{PyCall.PyAny}, ::IOStream, ::Vararg{IOStream,N}) at /home/andrewcz/.julia/v0.5/PyCall/src/PyCall.jl:571 in #call#71(::Array{Any,1}, ::PyCall.PyObject, ::IOStream, ::Vararg{IOStream,N}) at /home/andrewcz/.julia/v0.5/PyCall/src/PyCall.jl:574 in #loadyamlfile#41(::Bool, ::Function, ::String) at /home/andrewcz/.julia/v0.5/Mads/src/MadsYAML.jl:23 in (::Mads.#kw##loadyamlfile)(::Array{Any,1}, ::Mads.#loadyamlfile, ::String) at ./:0 in #loadmadsfile#6(::Bool, ::String, ::Function, ::String) at /home/andrewcz/.julia/v0.5/Mads/src/MadsIO.jl:29 in loadmadsfile(::String) at /home/andrewcz/.julia/v0.5/Mads/src/MadsIO.jl:28 in include_from_node1(::String) at ./loading.jl:488 while loading /home/andrewcz/.julia/v0.5/Mads/examples/contamination/contamination.jl, in expression starting on line 12

julia>

[AIAdventures]

so ran tests with pycall. no errors. the build still came back with errors. Many thanks, Best, Andrew

[montyvesselinov]

definitely the problem is in the python call to invoke YAML.

can you try this (you replace the respectve line in examples/contamination/contamination.jl).

md = Mads.loadmadsfile("w01.mads", julia=true)

[AIAdventures]

julia> include(Mads.madsdir * "examples/contamination/contamination.jl") ERROR: UndefVarError: Mads not defined

[AIAdventures]

i recently updated julia to the latest version.

[AIAdventures]

im not sure if this makes a difference.

[montyvesselinov]

You need to import mads again. On Tue, May 16, 2017 at 6:20 PM AIAdventures notifications@github.com wrote:

im not sure if this makes a difference.

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/madsjulia/Mads.jl/issues/16#issuecomment-301950436, or mute the thread https://github.com/notifications/unsubscribe-auth/AFXxeDB323yFtzRmyYfv1z4_fsAW27otks5r6j1lgaJpZM4Nceu1 .

-- -monty

[AIAdventures]

[AIAdventures]

[montyvesselinov]

Oh. Julia changed. You need slash before examples. On Tue, May 16, 2017 at 6:47 PM AIAdventures notifications@github.com wrote:

[image: image] https://cloud.githubusercontent.com/assets/26102503/26133910/2b4c6c32-3aee-11e7-989a-55ad68224213.png

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/madsjulia/Mads.jl/issues/16#issuecomment-301953897, or mute the thread https://github.com/notifications/unsubscribe-auth/AFXxeCongChdY3DlmBeXNmTvgZjf14msks5r6kOOgaJpZM4Nceu1 .

-- -monty

[AIAdventures]

[montyvesselinov]

Mads.madsdir * "/../examples/contamination/contamination.jl"

[AIAdventures]

julia> include(Mads.madsdir * "/../examples/contamination/contamination.jl") ERROR: LoadError: PyError (:PyObject_Call) <class 'TypeError'> TypeError('cannot use a string pattern on a bytes-like object',) File "/home/andrewcz/miniconda3/lib/python3.5/site-packages/yaml/init.py", line 70, in load loader = Loader(stream) File "/home/andrewcz/miniconda3/lib/python3.5/site-packages/yaml/loader.py", line 34, in init Reader.init(self, stream) File "/home/andrewcz/miniconda3/lib/python3.5/site-packages/yaml/reader.py", line 85, in init self.determine_encoding() File "/home/andrewcz/miniconda3/lib/python3.5/site-packages/yaml/reader.py", line 135, in determine_encoding self.update(1) File "/home/andrewcz/miniconda3/lib/python3.5/site-packages/yaml/reader.py", line 169, in update self.check_printable(data) File "/home/andrewcz/miniconda3/lib/python3.5/site-packages/yaml/reader.py", line 139, in check_printable match = self.NON_PRINTABLE.search(data)

in pyerr_check at /home/andrewcz/.julia/v0.5/PyCall/src/exception.jl:56 [inlined] in pyerr_check at /home/andrewcz/.julia/v0.5/PyCall/src/exception.jl:61 [inlined] in macro expansion at /home/andrewcz/.julia/v0.5/PyCall/src/exception.jl:81 [inlined] in #_pycall#66(::Array{Any,1}, ::Function, ::PyCall.PyObject, ::IOStream, ::Vararg{IOStream,N}) at /home/andrewcz/.julia/v0.5/PyCall/src/PyCall.jl:549 in _pycall(::PyCall.PyObject, ::IOStream, ::Vararg{IOStream,N}) at /home/andrewcz/.julia/v0.5/PyCall/src/PyCall.jl:537 in #pycall#70(::Array{Any,1}, ::Function, ::PyCall.PyObject, ::Type{PyCall.PyAny}, ::IOStream, ::Vararg{IOStream,N}) at /home/andrewcz/.julia/v0.5/PyCall/src/PyCall.jl:571 in pycall(::PyCall.PyObject, ::Type{PyCall.PyAny}, ::IOStream, ::Vararg{IOStream,N}) at /home/andrewcz/.julia/v0.5/PyCall/src/PyCall.jl:571 in #call#71(::Array{Any,1}, ::PyCall.PyObject, ::IOStream, ::Vararg{IOStream,N}) at /home/andrewcz/.julia/v0.5/PyCall/src/PyCall.jl:574 in #loadyamlfile#41(::Bool, ::Function, ::String) at /home/andrewcz/.julia/v0.5/Mads/src/MadsYAML.jl:23 in (::Mads.#kw##loadyamlfile)(::Array{Any,1}, ::Mads.#loadyamlfile, ::String) at ./:0 in #loadmadsfile#6(::Bool, ::String, ::Function, ::String) at /home/andrewcz/.julia/v0.5/Mads/src/MadsIO.jl:29 in loadmadsfile(::String) at /home/andrewcz/.julia/v0.5/Mads/src/MadsIO.jl:28 in include_from_node1(::String) at ./loading.jl:488 while loading /home/andrewcz/.julia/v0.5/Mads/examples/contamination/contamination.jl, in expression starting on line 12

julia>

[montyvesselinov]

please use md = Mads.loadmadsfile("w01.mads", julia=true) instead of md = Mads.loadmadsfile("w01.mads")

[AIAdventures]

julia> ^C

julia> md = Mads.loadmadsfile("w01.mads", julia=true) Dict{Any,Any} with 7 entries: "Grid" => Dict{Any,Any}(Pair{Any,Any}("zmax",50),Pair{Any,Any}("time",50),Pair{Any,Any}("xcount",33),Pair{Any,Any}("zcount",1),Pair{Any,Any}("ymin",1000),Pair{Any,Any}("zmin",0),Pair{Any,Any}("ycount",19),Pair{Any,Any}("xmax",2… "Sources" => Dict{Any,Any}[Dict{Any,Any}(Pair{Any,Any}("box",Dict{Any,Any}(Pair{Any,Any}("dz",Dict{Any,Any}(Pair{Any,Any}("longname","Source z dimension [L]"),Pair{Any,Any}("step",1.0),Pair{Any,Any}("init",1.0),Pair{Any,Any}("log"… "Parameters" => DataStructures.OrderedDict{Any,Any}("n"=>Dict{Any,Any}(Pair{Any,Any}("longname","Porosity [L3/L3]"),Pair{Any,Any}("step",0.1),Pair{Any,Any}("init",0.1),Pair{Any,Any}("log",false),Pair{Any,Any}("min",0.0),Pair{Any,Any}… "Wells" => DataStructures.OrderedDict{Any,Any}("w1a"=>Dict{Any,Any}(Pair{Any,Any}("obs",Dict{Any,Any}[Dict{Any,Any}(Pair{Any,Any}("weight",1),Pair{Any,Any}("c",0),Pair{Any,Any}("max",1.0e6),Pair{Any,Any}("log","no"),Pair{Any,Any… "Time" => Dict{Any,Any}(Pair{Any,Any}("step",1),Pair{Any,Any}("start",1),Pair{Any,Any}("end",50)) "Observations" => DataStructures.OrderedDict{Any,Any}("w1a_1"=>DataStructures.OrderedDict{Any,Any}("well"=>"w1a","time"=>1,"index"=>1,"target"=>0,"weight"=>1,"max"=>1.0e6,"log"=>"no","min"=>0),"w1a_2"=>DataStructures.OrderedDict{Any,An… "Filename" => "w01.mads"

julia>

[montyvesselinov]

so it works.

[AIAdventures]

[AIAdventures]

think this still issues with pycall

[montyvesselinov]

yes. that is why you need to replace in /home/andrewcz/.julia/v0.5/Mads/examples/contamination/contamination.jl

md = Mads.loadmadsfile("w01.mads")

with

md = Mads.loadmadsfile("w01.mads", julia=true)

[AIAdventures]

[montyvesselinov]

include("/home/andrewcz/.julia/v0.5/Mads/examples/contamination/contamination.jl")

[AIAdventures]

[montyvesselinov]

yes. that is why you need to replace in /home/andrewcz/.julia/v0.5/Mads/examples/contamination/contamination.jl

md = Mads.loadmadsfile("w01.mads")

with

md = Mads.loadmadsfile("w01.mads", julia=true)

[AIAdventures]

include(Mads.madsdir * "/home/andrewcz/.julia/v0.5/Mads/examples/contamination/contamination.jl")

[montyvesselinov]

replace in /home/andrewcz/.julia/v0.5/Mads/examples/contamination/contamination.jl

md = Mads.loadmadsfile("w01.mads")

with

md = Mads.loadmadsfile("w01.mads", julia=true)

[AIAdventures]

ah ok, thankyou :)

[montyvesselinov]

YAML.load failure catch added now; checkout the latest.