search

madsjulia / Mads.jl

MADS: Model Analysis & Decision Support
http://mads.gitlab.io
GNU General Public License v3.0
101 stars 20 forks source link

Pkg.test("Mads") and Pkg.test("ReusableFunctions") fail #8

Closed finmod closed 7 years ago

finmod commented 7 years ago

The two packages Mads and ReusableFunctions fail Pkg.test with the following errors:

Error: could not spawn 'git status -s': n such file or directory (ENOENT) for Mads

Error: rm -Rf reusableFunctions_restart: no such file or directory (ENOENT) for ReusableFunctions

All other packages passed.

In the runtests, many fail with parsemadsdata flags. Would have to see if these persist after all packages pass Pkg.test()

montyvesselinov commented 7 years ago

Which version of julia you are using?

There was a problem with one of our modules; AffineInvariantMCMC; it was missing in METADATA. Now everything should be fine.

finmod commented 7 years ago

Julia 0.5.0. The errors on Pkg.test("Mads") and Pkg.test("ReusableFunctions") persist both of the type: error: LoadError: could not spawn rm -Rf ReusableFunctions_restart: no such file or directory (ENOENT) for ReusableFunctions

montyvesselinov commented 7 years ago

I think it is fixed now. Do

Mads.checkout()

to get the latest.

finmod commented 7 years ago

Have tried Pkg.checkout("Mads"), Pkg.rm("Mads") twice, Pkg.rm("BIGUQ") separately, Pkg.add("Mads"), Pkg.checkout("Mads"), Pkg.update(). Does give me latest Mads. Then Pkg.test("Mads") errors again as:

capture

montyvesselinov commented 7 years ago

Try again; more fixes added to work on Windows.

finmod commented 7 years ago

Correct. Pkg.test("Mads") passes in Ubuntu with just a few warnings that you probably know: LMLin, PkgDev and some items in "observations". Instead, in Windows, Pkg.test("Mads") continues to produce numerous warnings and fails as follows:

image

montyvesselinov commented 7 years ago

i am not sure what is going on. can you paste more information about where this error occurs?! Thank you very much!

-monty

On Sat, Dec 10, 2016 at 2:50 AM, finmod notifications@github.com wrote:

Correct. Pkg.test("Mads") passes in Ubuntu with just a few warnings that you probably know: LMLin, PkgDev and some items in "observations". Instead, in Windows, Pkg.test("Mads") continues to produce numerous warnings and fails as follows:

[image: image] https://cloud.githubusercontent.com/assets/12710434/21072517/22ff9706-bec6-11e6-8476-ea061a90141c.png

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/madsjulia/Mads.jl/issues/8#issuecomment-266194227, or mute the thread https://github.com/notifications/unsubscribe-auth/AFXxeCGDUKvcbWyZbjlDYoRPYs3gzQPTks5rGnX-gaJpZM4LAxJT .

finmod commented 7 years ago 
           _

() | A fresh approach to technical computing () | () () | Documentation: http://docs.julialang.org | | | Type "?help" for help. | | | | | | |/ ` | | | | || | | | (| | | Version 0.5.0 (2016-09-19 18:14 UTC) / |_'|||_'_| | Official http://julialang.org/ release |/ | x86_64-w64-mingw32

julia> Pkg.update() INFO: Updating METADATA... INFO: Updating cache of DataFrames... INFO: Updating cache of DataFrames... INFO: Updating ForwardDiff master... INFO: Updating ODE master... INFO: Updating Sundials master... INFO: Updating Optim master... INFO: Updating MatlabCompat master... INFO: Updating JuMP master... INFO: Updating ManifoldLearning master... INFO: Updating DecFP master... INFO: Updating GaussianProcesses master... INFO: Updating CUDArt master... INFO: Updating ScikitLearn master... INFO: Updating Combinatorics master... INFO: Updating ImageMagick master... INFO: Updating SymEngine master... INFO: Updating Games master... INFO: Updating Unitful master... INFO: Updating DifferentialEquations master... INFO: Computing changes... INFO: No packages to install, update or remove

julia> Pkg.test("Mads") INFO: Testing Mads WARNING: LMLin is not available WARNING: PkgDev is not available WARNING: Method definition dobigoed(BIGUQ.BigOED, Real, Int64, Int64, Int64, Real) in module BIGUQ at C:\Users\Denis.julia\v0.5\BIGUQ\src\BIGOED.jl:139 overwritten at C:\Users\Denis.julia\v0.5\BIGUQ\src\BIGOED.jl:155. Running MADS tests:

failed process: Process('C:\Users\Denis\AppData\Local\Julia-0.5.0\bin\julia' -Cx86-64 '-JC:\Users\Denis\AppData\Local\Julia-0.5.0\lib\julia\sys.dll' --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=yes --compilecache=yes 'C:\Users\Denis\.julia\v0.5\Mads\test\runtests.jl', ProcessExited(1)) [1]

================================================================================ ERROR: Mads had test errors in #test#61(::Bool, ::Function, ::Array{AbstractString,1}) at .\pkg\entry.jl:740 in (::Base.Pkg.Entry.#kw##test)(::Array{Any,1}, ::Base.Pkg.Entry.#test, ::Array{AbstractString,1}) at .\:0 in (::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}})() at .\pkg\dir.jl:31 in cd(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}}, ::String) at .\file.jl:48 in #cd#1(::Array{Any,1}, ::Function, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at .\pkg\dir.jl:31 in (::Base.Pkg.Dir.#kw##cd)(::Array{Any,1}, ::Base.Pkg.Dir.#cd, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at .\:0 in #test#3(::Bool, ::Function, ::String, ::Vararg{String,N}) at .\pkg\pkg.jl:258 in test(::String, ::Vararg{String,N}) at .\pkg\pkg.jl:258

julia>

montyvesselinov commented 7 years ago

fix added; check for git performed.

-monty

On Sat, Dec 10, 2016 at 10:05 AM, finmod notifications@github.com wrote:

       _

()_ | A fresh approach to technical computing () | () (

) | Documentation: http://docs.julialang.org http://docs.julialang.org | | _ | Type "?help" for help. | | | | | | |/ ` | | | | || | | | (| | | Version 0.5.0 (2016-09-19 18:14 UTC) / |_'|||_'_| | Official http://julialang.org/ release |__/ | x86_64-w64-mingw32

julia> Pkg.update() INFO: Updating METADATA... INFO: Updating cache of DataFrames... INFO: Updating cache of DataFrames... INFO: Updating ForwardDiff master... INFO: Updating ODE master... INFO: Updating Sundials master... INFO: Updating Optim master... INFO: Updating MatlabCompat master... INFO: Updating JuMP master... INFO: Updating ManifoldLearning master... INFO: Updating DecFP master... INFO: Updating GaussianProcesses master... INFO: Updating CUDArt master... INFO: Updating ScikitLearn master... INFO: Updating Combinatorics master... INFO: Updating ImageMagick master... INFO: Updating SymEngine master... INFO: Updating Games master... INFO: Updating Unitful master... INFO: Updating DifferentialEquations master... INFO: Computing changes... INFO: No packages to install, update or remove

julia> Pkg.test("Mads") INFO: Testing Mads WARNING: LMLin is not available WARNING: PkgDev is not available WARNING: Method definition dobigoed(BIGUQ.BigOED, Real, Int64, Int64, Int64, Real) in module BIGUQ at C:\Users\Denis.julia\v0.5\BIGUQ\src\BIGOED.jl:139 overwritten at C:\Users\Denis.julia\v0.5\BIGUQ\src\BIGOED.jl:155. Running MADS tests:

  • miscellaneous ... INFO: Git status Mads ... ERROR: LoadError: LoadError: could not spawn git status -s: no such file or directory (ENOENT) in _jl_spawn(::String, ::Array{String,1}, ::Ptr{Void}, ::Base.Process, ::RawFD, ::RawFD, ::RawFD) at .\process.jl:321 in #414 at .\process.jl:478 [inlined] in setup_stdio(::Base.##414#415{Cmd,Ptr{Void},Base.Process}, ::Tuple{RawFD,RawFD,RawFD}) at .\process.jl:466 in #spawn#413(::Nullable{Base.ProcessChain}, ::Function, ::Cmd, ::Tuple{RawFD,RawFD,RawFD}, ::Bool, ::Bool) at .\process.jl:477 in run at .\process.jl:591 [inlined] in #status#2(::Bool, ::Bool, ::Function, ::String) at C:\Users\Denis.julia\v0.5\Mads\src\MadsPublish.jl:36 in (::Mads.#kw##status)(::Array{Any,1}, ::Mads.#status, ::String) at .:0 in #status#1(::Bool, ::Bool, ::Function) at C:\Users\Denis.julia\v0.5\ Mads\src\MadsPublish.jl:27 in status() at C:\Users\Denis.julia\v0.5\Mads\src\MadsPublish.jl:26 in include_from_node1(::String) at .\loading.jl:488 (repeats 2 times) in process_options(::Base.JLOptions) at .\client.jl:262 in _start() at .\client.jl:318 while loading C:\Users\Denis.julia\v0.5\Mads\test\miscellaneous.jl, in expression starting on line 21 while loading C:\Users\Denis.julia\v0.5\Mads\test\runtests.jl, in expression starting on line 7 ================================[ ERROR: Mads ]=================================

failed process: Process('C:\Users\Denis\AppData\Local\Julia-0.5.0\bin\julia' -Cx86-64 '-JC:\Users\Denis\AppData\Local\Julia-0.5.0\lib\julia\sys.dll' --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=yes --compilecache=yes 'C:\Users\Denis.julia\v0.5\ Mads\test\runtests.jl', ProcessExited(1)) [1]

============================================================

ERROR: Mads had test errors in #test#61(::Bool, ::Function, ::Array{AbstractString,1}) at .\pkg\entry.jl:740 in (::Base.Pkg.Entry.#kw##test)(::Array{Any,1}, ::Base.Pkg.Entry.#test, ::Array{AbstractString,1}) at .:0 in (::Base.Pkg.Dir.##2 https://github.com/madsjulia/Mads.jl/pull/2

3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}})()

at .\pkg\dir.jl:31 in cd(::Base.Pkg.Dir.##2 https://github.com/madsjulia/Mads.jl/pull/2

3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}},

::String) at .\file.jl:48 in #cd#1(::Array{Any,1}, ::Function, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at .\pkg\dir.jl:31 in (::Base.Pkg.Dir.#kw##cd)(::Array{Any,1}, ::Base.Pkg.Dir.#cd, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at .:0 in #test#3(::Bool, ::Function, ::String, ::Vararg{String,N}) at .\pkg\pkg.jl:258 in test(::String, ::Vararg{String,N}) at .\pkg\pkg.jl:258

julia>

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/madsjulia/Mads.jl/issues/8#issuecomment-266222886, or mute the thread https://github.com/notifications/unsubscribe-auth/AFXxeCdmYoXcrdP7dsiqT-HHswU9c9dzks5rGtu8gaJpZM4LAxJT .

finmod commented 7 years ago

Thank you. Almost there. Pkg.test("Mads") still give similar errors further down:

"getparamkeys" "getparamrandom" "getparamsdefault" "getparamsinit" "getparamslog" "getparamslogdefault" "getparamslongname" "getparamsmax" "getparamsmin" "getparamsnames" "getparamsplotname" "getparamsstep" "getparamstype" "getparamstypes" "getprocs" "getrestartdir" "getrootname" "getsourcekeys" "gettarget" "gettargetkeys" "gettime" "getweight" "getwellkeys" "getwellsdata" "graphbackend" "graphoff" "graphon" "graphoutput" "haskeyword" "help" "importeverywhere" "index" "indexkeys" "instline2regexs" "invobsweights!" "invwellweights!" "islog" "isobs" "isopt" "isparam" "keywordname" "keywordvalsNOT" "krige" "loadasciifile" "loadjsonfile" "loadmadsfile" "loadsaltellirestart!" "loadyamlfile" "localsa" "madscores" "madscritical" "madsdebug" "madsdir" "madserror" "madsinfo" "madsinputfile" "madsload" "madsmodules" "madsoutput" "madsservers" "madsup" "madswarn" "makearrayconditionalloglikelihood" "makearrayfunction" "makearrayloglikelihood" "makebigdt" "makebigdt!" "makecomputeconcentrations" "makedixonprice" "makedoublearrayfunction" "makelmfunctions" "makelocalsafunction" "makelogprior" "makemadscommandfunction" "makemadscommandfunctionandgradient" "makemadscommandgradient" "makemadsconditionalloglikelihood" "makemadsloglikelihood" "makemadsreusablefunction" "makemakearrayconditionalloglikelihood" "makepowell" "makerosenbrock" "makerotatedhyperellipsoid" "makesphere" "makesumsquares" "maxtorealmax!" "modelinformationcriteria" "modelruns" "modobsweights!" "modwellweights!" "montecarlo" "noplot" "obslineismatch" "of" "paramarray2dict" "paramdict2array" "parsemadsdata!" "parsenodenames" "partialof" "plotgrid" "plotmadsproblem" "plotmass" "plotmatches" "plotobsSAresults" "plotrobustnesscurves" "plotseries" "plotwellSAresults" "printSAresults" "printSAresults2" "pyyamlok" "quiet" "quietoff" "quieton" "readasciipredictions" "readjsonpredictions" "readobservations" "readyamlpredictions" "regexs2obs" "reload" "resetmodelruns" "residuals" "reweighsamples" "rmdir" "rmfile" "rosenbrock" "runcmd" "runremote" "saltelli" "saltellibrute" "saltellibruteparallel" "saltelliparallel" "sampling" "savecalibrationresults" "savemadsfile" "savemcmcresults" "savesaltellirestart" "scatterplotsamples" "searchdir" "setallparamsoff!" "setallparamson!" "setdebuglevel" "setdefaultplotformat" "setdir" "setdynamicmodel" "setmadsinputfile" "setnewmadsfilename" "setobservationtargets!" "setobstime!" "setobsweights!" "setparamoff!" "setparamon!" "setparamsdistnormal!" "setparamsdistuniform!" "setparamsinit!" "setplotfileformat" "setprocs" "setseed" "settarget!" "settime!" "setverbositylevel" "setweight!" "setwellweights!" "showallparameters" "showobservations" "showparameters" "sinetransform" "sinetransformfunction" "sinetransformgradient" "spaghettiplot" "spaghettiplots" "sphericalcov" "sphericalvariogram" "sprintf" "status" "svrFeature" "svrOutput" "symlinkdir" "symlinkdirfiles" "tag" "test" "testj" "verbositylevel" "void2nan!" "weightedstats" "welloff!" "wellon!" "wells2observations!" "writeparameters" "writeparametersviatemplate" "yaml" INFO: BIGUQ functions: 15-element Array{Any,1}: "BIGUQ" "BigDT" "BigOED" "dataframeresults" "dobigoed" "generateproposedobs" "getfailureprobabilities" "getmcmcchain" "getrobustness" "getrobustnesscurve" "inbox" "makebigdts" "makedecision" "makedecisionforproposedobs" "printresults" INFO: Anasol functions: 22-element Array{Any,1}: "@code" "Anasol" "boundaryexpr" "boundarynames" "cinnerkernel" "dispersionnames" "dispersiontimedependenceexpr" "distributionexprs" "getboundaries" "getdispersions" "getinitdispersionfactor" "getsources" "inclosedinterval" "infinitedomainexpr" "innerkernel" "kernel" "maxnumberofdimensions" "quadgkwithtol" "retexpr" "sourcenames" "standardnormal" "symbolindex" INFO: ReusableFunctions functions: 3-element Array{Any,1}: "ReusableFunctions" "gethashfilename" "maker3function" INFO: MetaProgTools functions: 7-element Array{Any,1}: "MetaProgTools" "getsymbols" "in" "populateexpression" "populateexpression!" "replacesymbol" "replacesymbol!" INFO: RobustPmap functions: 4-element Array{Any,1}: "RobustPmap" "checkexceptions" "crpmap" "rpmap" INFO: Mads functions: 1-element Array{Any,1}: "createmadsproblem"INFO: Mads functions: 1-element Array{Any,1}: "loadmadsfile"ERROR: LoadError: LoadError: could not spawn dir 'C:\Users\Denis\.julia\v0.5\Mads': no such file or directory (ENOENT) in _jl_spawn(::String, ::Array{String,1}, ::Ptr{Void}, ::Base.Process, ::Base.PipeEndpoint, ::Base.PipeEndpoint, ::Base.PipeEndpoint) at .\process.jl:321 in #414 at .\process.jl:478 [inlined] in setup_stdio(::Base.##414#415{Cmd,Ptr{Void},Base.Process}, ::Tuple{Pipe,Pipe,Pipe}) at .\process.jl:466 in #spawn#413(::Nullable{Base.ProcessChain}, ::Function, ::Cmd, ::Tuple{Pipe,Pipe,Pipe}, ::Bool, ::Bool) at .\process.jl:477 in (::Base.#kw##spawn)(::Array{Any,1}, ::Base.#spawn, ::Cmd, ::Tuple{Pipe,Pipe,Pipe}, ::Bool, ::Bool) at .\:0 in runcmd(::Cmd, ::Bool) at C:\Users\Denis.julia\v0.5\Mads\src../src-interactive\MadsParallel.jl:275 in runcmd(::Cmd) at C:\Users\Denis.julia\v0.5\Mads\src../src-interactive\MadsParallel.jl:272 in include_from_node1(::String) at .\loading.jl:488 (repeats 2 times) in process_options(::Base.JLOptions) at .\client.jl:262 in _start() at .\client.jl:318 while loading C:\Users\Denis.julia\v0.5\Mads\test\miscellaneous.jl, in expression starting on line 43 while loading C:\Users\Denis.julia\v0.5\Mads\test\runtests.jl, in expression starting on line 7 ================================[ ERROR: Mads ]=================================

failed process: Process('C:\Users\Denis\AppData\Local\Julia-0.5.0\bin\julia' -Cx86-64 '-JC:\Users\Denis\AppData\Local\Julia-0.5.0\lib\julia\sys.dll' --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=yes --compilecache=yes 'C:\Users\Denis\.julia\v0.5\Mads\test\runtests.jl', ProcessExited(1)) [1]

================================================================================ ERROR: Mads had test errors in #test#61(::Bool, ::Function, ::Array{AbstractString,1}) at .\pkg\entry.jl:740 in (::Base.Pkg.Entry.#kw##test)(::Array{Any,1}, ::Base.Pkg.Entry.#test, ::Array{AbstractString,1}) at .\:0 in (::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}})() at .\pkg\dir.jl:31 in cd(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}}, ::String) at .\file.jl:48 in #cd#1(::Array{Any,1}, ::Function, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at .\pkg\dir.jl:31 in (::Base.Pkg.Dir.#kw##cd)(::Array{Any,1}, ::Base.Pkg.Dir.#cd, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at .\:0 in #test#3(::Bool, ::Function, ::String, ::Vararg{String,N}) at .\pkg\pkg.jl:258 in test(::String, ::Vararg{String,N}) at .\pkg\pkg.jl:258

julia>

montyvesselinov commented 7 years ago

Maybe it should work now.

finmod commented 7 years ago

Pkg.checkout("Mads"), Pkg.update(), Pkg.test("Mads") and then? The same as before, I think:

"populateexpression!" "replacesymbol" "replacesymbol!" INFO: RobustPmap functions: 4-element Array{Any,1}: "RobustPmap" "checkexceptions" "crpmap" "rpmap" INFO: Mads functions: 1-element Array{Any,1}: "createmadsproblem"INFO: Mads functions: 1-element Array{Any,1}: "loadmadsfile"ERROR: LoadError: LoadError: could not spawn dir 'C:\Users\Denis\.julia\v0.5\Mads': no such file or directory (ENOENT) in _jl_spawn(::String, ::Array{String,1}, ::Ptr{Void}, ::Base.Process, ::RawFD, ::RawFD, ::RawFD) at .\process.jl:321 in #414 at .\process.jl:478 [inlined] in setup_stdio(::Base.##414#415{Cmd,Ptr{Void},Base.Process}, ::Tuple{RawFD,RawFD,RawFD}) at .\process.jl:466 in #spawn#413(::Nullable{Base.ProcessChain}, ::Function, ::Cmd, ::Tuple{RawFD,RawFD,RawFD}, ::Bool, ::Bool) at .\process.jl:477 in run(::Cmd) at .\process.jl:591 in include_from_node1(::String) at .\loading.jl:488 (repeats 2 times) in process_options(::Base.JLOptions) at .\client.jl:262 in _start() at .\client.jl:318 while loading C:\Users\Denis.julia\v0.5\Mads\test\miscellaneous.jl, in expression starting on line 43 while loading C:\Users\Denis.julia\v0.5\Mads\test\runtests.jl, in expression starting on line 7 ================================[ ERROR: Mads ]=================================

failed process: Process('C:\Users\Denis\AppData\Local\Julia-0.5.0\bin\julia' -Cx86-64 '-JC:\Users\Denis\AppData\Local\Julia-0.5.0\lib\julia\sys.dll' --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=yes --compilecache=yes 'C:\Users\Denis\.julia\v0.5\Mads\test\runtests.jl', ProcessExited(1)) [1]

================================================================================ ERROR: Mads had test errors in #test#61(::Bool, ::Function, ::Array{AbstractString,1}) at .\pkg\entry.jl:740 in (::Base.Pkg.Entry.#kw##test)(::Array{Any,1}, ::Base.Pkg.Entry.#test, ::Array{AbstractString,1}) at .\:0 in (::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}})() at .\pkg\dir.jl:31 in cd(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}}, ::String) at .\file.jl:48 in #cd#1(::Array{Any,1}, ::Function, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at .\pkg\dir.jl:31 in (::Base.Pkg.Dir.#kw##cd)(::Array{Any,1}, ::Base.Pkg.Dir.#cd, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at .\:0 in #test#3(::Bool, ::Function, ::String, ::Vararg{String,N}) at .\pkg\pkg.jl:258 in test(::String, ::Vararg{String,N}) at .\pkg\pkg.jl:258

julia>

montyvesselinov commented 7 years ago

more fixes pushed

finmod commented 7 years ago

Same sequence and same output as my previous comment even though Mads master was updated.

montyvesselinov commented 7 years ago

Something is strange.

Do you have a directory C:\Users\Denis\.julia\v0.5\Mads?

can you do

run(`dir C:\Users\Denis\.julia\v0.5`)
run(`dir C:\Users\Denis\.julia\v0.5\Mads`)

For your case it might be more important to do these tests:

Mads.test("model_coupling")
Mads.test("optimization")

Do they work?

finmod commented 7 years ago

On Ubuntu, these commands are fine. On Windows:

julia> using Mads WARNING: LMLin is not available WARNING: PkgDev is not available

julia> Mads.test("model_coupling") ERROR: LoadError: MethodError: no method matching parsemadsdata!(::String) Closest candidates are: parsemadsdata!(::Associative{K,V}) at C:\Users\Denis.julia\v0.5\Mads\src\MadsIO.jl:52 in #loadmadsfile#1(::Bool, ::String, ::Function, ::String) at C:\Users\Denis.julia\v0.5\Mads\src\MadsIO.jl:27 in loadmadsfile(::String) at C:\Users\Denis.julia\v0.5\Mads\src\MadsIO.jl:22 in include_from_node1(::String) at .\loading.jl:488 in test(::String) at C:\Users\Denis.julia\v0.5\Mads\src../src-interactive\MadsTest.jl:41 while loading C:\Users\Denis.julia\v0.5\Mads\examples\model_coupling\runtests.jl, in expression starting on line 10

julia> Mads.test("optimization") ERROR: LoadError: LoadError: MethodError: no method matching parsemadsdata!(::String) Closest candidates are: parsemadsdata!(::Associative{K,V}) at C:\Users\Denis.julia\v0.5\Mads\src\MadsIO.jl:52 in #loadmadsfile#1(::Bool, ::String, ::Function, ::String) at C:\Users\Denis.julia\v0.5\Mads\src\MadsIO.jl:27 in loadmadsfile(::String) at C:\Users\Denis.julia\v0.5\Mads\src\MadsIO.jl:22 in include_from_node1(::String) at .\loading.jl:488 (repeats 2 times) in test(::String) at C:\Users\Denis.julia\v0.5\Mads\src../src-interactive\MadsTest.jl:41 while loading C:\Users\Denis.julia\v0.5\Mads\examples\optimization/optimization_linear_problem.jl, in expression starting on line 6 while loading C:\Users\Denis.julia\v0.5\Mads\examples\optimization\runtests.jl, in expression starting on line 25

julia>

montyvesselinov commented 7 years ago

You will need to fix the symlinks on windows. to do so need to install git. After that you need to get in the Mads directory and execute:

git config --global alias.rm-symlink '!__git_rm_symlink(){
    git checkout -- "$1"
    link=$(echo "$1")
    POS=$'\''/'\''
    DOS=$'\''\\\\'\''
    doslink=${link//$POS/$DOS}
    dest=$(dirname "$link")/$(cat "$link")
    dosdest=${dest//$POS/$DOS}
    if [ -f "$dest" ]; then
        rm -f "$link"
        cmd //C mklink //H "$doslink" "$dosdest"
    elif [ -d "$dest" ]; then
        rm -f "$link"
        cmd //C mklink //J "$doslink" "$dosdest"
    else
        echo "ERROR: Something went wrong when processing $1 . . ."
        echo "       $dest may not actually exist as a valid target."
    fi
}; __git_rm_symlink "$1"'

git config --global alias.rm-symlinks '!__git_rm_symlinks(){
    for symlink in $(git ls-files -s | egrep "^120000" | cut -f2); do
        git rm-symlink "$symlink"
        git update-index --assume-unchanged "$symlink"
    done
}; __git_rm_symlinks'

after that execute:

git rm-symlinks

this will fix all the links.

you can find more here:

http://stackoverflow.com/questions/5917249/git-symlinks-in-windows

finmod commented 7 years ago

git works as expected above. What next for Pkg.test("Mads")? Does it need reinstalling or just update?

montyvesselinov commented 7 years ago

Just update. On Mon, Dec 12, 2016 at 12:38 PM finmod notifications@github.com wrote:

git works as expected above. What next for Pkg.test("Mads")? Does it need reinstalling or just update?

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/madsjulia/Mads.jl/issues/8#issuecomment-266530138, or mute the thread https://github.com/notifications/unsubscribe-auth/AFXxeIux8N0WQ96tHX5R7C1JIrCcllKBks5rHaLRgaJpZM4LAxJT .

-- -monty

finmod commented 7 years ago

Sorry, same outcome and errors as above.

montyvesselinov commented 7 years ago

Try to run only the run and mads.test commands only. On Mon, Dec 12, 2016 at 12:56 PM finmod notifications@github.com wrote:

Sorry, same outcome and errors as above.

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/madsjulia/Mads.jl/issues/8#issuecomment-266534984, or mute the thread https://github.com/notifications/unsubscribe-auth/AFXxePu-tz3PuPG8TOUUcOq2RMC2OXIxks5rHabagaJpZM4LAxJT .

-- -monty

finmod commented 7 years ago

Same outcome again. There was a problem with running git as Administrator but then the two tests give the usual errors. unfortunately, this does not appear to be a minor issue.

julia> using Mads WARNING: LMLin is not available WARNING: PkgDev is not available

julia> Mads.test("model_coupling") ERROR: LoadError: MethodError: no method matching parsemadsdata!(::String) Closest candidates are: parsemadsdata!(::Associative{K,V}) at C:\Users\Denis.julia\v0.5\Mads\src\MadsIO.jl:52 in #loadmadsfile#1(::Bool, ::String, ::Function, ::String) at C:\Users\Denis.julia\v0.5\Mads\src\MadsIO.jl:27 in loadmadsfile(::String) at C:\Users\Denis.julia\v0.5\Mads\src\MadsIO.jl:22 in include_from_node1(::String) at .\loading.jl:488 in test(::String) at C:\Users\Denis.julia\v0.5\Mads\src../src-interactive\MadsTest.jl:41 while loading C:\Users\Denis.julia\v0.5\Mads\examples\model_coupling\runtests.jl, in expression starting on line 10

julia> Mads.test("optimization") ERROR: LoadError: LoadError: MethodError: no method matching parsemadsdata!(::String) Closest candidates are: parsemadsdata!(::Associative{K,V}) at C:\Users\Denis.julia\v0.5\Mads\src\MadsIO.jl:52 in #loadmadsfile#1(::Bool, ::String, ::Function, ::String) at C:\Users\Denis.julia\v0.5\Mads\src\MadsIO.jl:27 in loadmadsfile(::String) at C:\Users\Denis.julia\v0.5\Mads\src\MadsIO.jl:22 in include_from_node1(::String) at .\loading.jl:488 (repeats 2 times) in test(::String) at C:\Users\Denis.julia\v0.5\Mads\src../src-interactive\MadsTest.jl:41 while loading C:\Users\Denis.julia\v0.5\Mads\examples\optimization/optimization_linear_problem.jl, in expression starting on line 6 while loading C:\Users\Denis.julia\v0.5\Mads\examples\optimization\runtests.jl, in expression starting on line 25

julia>

montyvesselinov commented 7 years ago

I do not have windows machine with me at the moment. I am on travel. I will check it when I am back next week. On Mon, Dec 12, 2016 at 1:31 PM finmod notifications@github.com wrote:

Same outcome again. There was a problem with running git as Administrator but then the two tests give the usual errors. unfortunately, this does not appear to be a minor issue.

julia> using Mads WARNING: LMLin is not available WARNING: PkgDev is not available

julia> Mads.test("model_coupling") ERROR: LoadError: MethodError: no method matching parsemadsdata!(::String) Closest candidates are: parsemadsdata!(::Associative{K,V}) at C:\Users\Denis.julia\v0.5\Mads\src\MadsIO.jl:52 in #loadmadsfile#1(::Bool, ::String, ::Function, ::String) at C:\Users\Denis.julia\v0.5\Mads\src\MadsIO.jl:27 in loadmadsfile(::String) at C:\Users\Denis.julia\v0.5\Mads\src\MadsIO.jl:22 in include_from_node1(::String) at .\loading.jl:488 in test(::String) at C:\Users\Denis.julia\v0.5\Mads\src../src-interactive\MadsTest.jl:41 while loading C:\Users\Denis.julia\v0.5\Mads\examples\model_coupling\runtests.jl, in expression starting on line 10

julia> Mads.test("optimization") ERROR: LoadError: LoadError: MethodError: no method matching parsemadsdata!(::String) Closest candidates are: parsemadsdata!(::Associative{K,V}) at C:\Users\Denis.julia\v0.5\Mads\src\MadsIO.jl:52 in #loadmadsfile#1(::Bool, ::String, ::Function, ::String) at C:\Users\Denis.julia\v0.5\Mads\src\MadsIO.jl:27 in loadmadsfile(::String) at C:\Users\Denis.julia\v0.5\Mads\src\MadsIO.jl:22 in include_from_node1(::String) at .\loading.jl:488 (repeats 2 times) in test(::String) at C:\Users\Denis.julia\v0.5\Mads\src../src-interactive\MadsTest.jl:41 while loading C:\Users\Denis.julia\v0.5\Mads\examples\optimization/optimization_linear_problem.jl, in expression starting on line 6 while loading C:\Users\Denis.julia\v0.5\Mads\examples\optimization\runtests.jl, in expression starting on line 25

julia>

—

You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/madsjulia/Mads.jl/issues/8#issuecomment-266559020, or mute the thread https://github.com/notifications/unsubscribe-auth/AFXxeHjaNftAPdOG9hzni24VjLqwu8W3ks5rHb08gaJpZM4LAxJT .

-- -monty

montyvesselinov commented 7 years ago

Mads used to work on Windows and it will be not difficult to make the necessary changes to make it wotk again when I have a access to a windows machine for testing. This will be over the weekend. In between, you can try to run using ubuntu. Ubuntu shell can be used natively with windows 10.

http://www.howtogeek.com/249966/how-to-install-and-use-the-linux-bash-shell-on-windows-10/

finmod commented 7 years ago

Thank you. No problem waiting a few days for the Windows version. I run my Julia-Ubuntu (16.04) on a VMBox but in that configuration I cannot use my full computer capabilities. I have also set up the Windows subsystem Ubuntu with better access to CPU and GPU. At present, it is limited in the ability to run IJulia, browsers and Jupyter notebooks..... This is why I am almost condemned to run all three set-ups concurrently in the hope that one of them can deliver at any one time!

montyvesselinov commented 7 years ago

All the MS windows issues are resolved. Mads now works on MS windows machines.

finmod commented 7 years ago

Still a small problem remaining in bayesian_sampling.

I have set up Mads on Bash on Ubuntu and Pkg.test("Mads") passed in all my Ubuntu versions. On Windows, after all checkout, build and update...Pkg.test("Mads") still fails in bayesian_sampling:

.............
12-Oct-16 03:39 PM 597 TEST.md 15 File(s) 55,550 bytes 14 Dir(s) 223,738,265,600 bytes free WARNING: 2016-12-17 21:36:03 Requested format (TIFF) is not acceptable! (PNG|PDF|PS|SVG) WARNING: File mads.png is missing! WARNING: Do not know how to open test.png WARNING: 2016-12-17 21:36:28 Keyword already ssdr exists INFO: Git status Mads ... INFO: Git status Anasol ... INFO: Git status AffineInvariantMCMC ... INFO: Git status BIGUQ ... INFO: Git status ReusableFunctions ... INFO: Git status RobustPmap ... INFO: Git status MetaProgTools ... WARNING: Unknown parallel environment! WARNING: No processors found to add! INFO: Number of processors: 1 [1]

failed process: Process('C:\Users\Denis\AppData\Local\Julia-0.5.0\bin\julia' -Cx86-64 '-JC:\Users\Denis\AppData\Local\Julia-0.5.0\lib\julia\sys.dll' --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=yes --compilecache=yes 'C:\Users\Denis\.julia\v0.5\Mads\test\runtests.jl', ProcessExited(1)) [1]

================================================================================ ERROR: Mads had test errors in #test#61(::Bool, ::Function, ::Array{AbstractString,1}) at .\pkg\entry.jl:740 in (::Base.Pkg.Entry.#kw##test)(::Array{Any,1}, ::Base.Pkg.Entry.#test, ::Array{AbstractString,1}) at .\:0 in (::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}})() at .\pkg\dir.jl:31 in cd(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}}, ::String) at .\file.jl:48 in #cd#1(::Array{Any,1}, ::Function, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at .\pkg\dir.jl:31 in (::Base.Pkg.Dir.#kw##cd)(::Array{Any,1}, ::Base.Pkg.Dir.#cd, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at .\:0 in #test#3(::Bool, ::Function, ::String, ::Vararg{String,N}) at .\pkg\pkg.jl:258 in test(::String, ::Vararg{String,N}) at .\pkg\pkg.jl:258

julia>

rumipix commented 7 years ago

you need to do

git rm-symlinks

again.

finmod commented 7 years ago

After Pkg.checkout, Pkg.build, Pkg.update, git rm-symlinks and Mads update to 8e0b44c, Pkg.test("Mads") passes all the way to model_coupling where it errors with the following:

WARNING: 2016-12-18 18:59:09 Requested format (TIFF) is not acceptable! (PNG|PDF|PS|SVG) WARNING: File mads.png is missing! WARNING: Do not know how to open test.png WARNING: 2016-12-18 18:59:33 Keyword already ssdr exists INFO: Git status Mads ... INFO: Git status Anasol ... INFO: Git status AffineInvariantMCMC ... INFO: Git status BIGUQ ... INFO: Git status ReusableFunctions ... INFO: Git status RobustPmap ... INFO: Git status MetaProgTools ... WARNING: Unknown parallel environment! WARNING: No processors found to add! INFO: Number of processors: 1 [1]

failed process: Process('C:\Users\Denis\AppData\Local\Julia-0.5.0\bin\julia' -Cx86-64 '-JC:\Users\Denis\AppData\Local\Julia-0.5.0\lib\julia\sys.dll' --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=yes --compilecache=yes 'C:\Users\Denis\.julia\v0.5\Mads\test\runtests.jl', ProcessExited(1)) [1]

================================================================================ ERROR: Mads had test errors in #test#61(::Bool, ::Function, ::Array{AbstractString,1}) at .\pkg\entry.jl:740 in (::Base.Pkg.Entry.#kw##test)(::Array{Any,1}, ::Base.Pkg.Entry.#test, ::Array{AbstractString,1}) at .\:0 in (::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}})() at .\pkg\dir.jl:31 in cd(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}}, ::String) at .\file.jl:48 in #cd#1(::Array{Any,1}, ::Function, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at .\pkg\dir.jl:31 in (::Base.Pkg.Dir.#kw##cd)(::Array{Any,1}, ::Base.Pkg.Dir.#cd, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at .\:0 in #test#3(::Bool, ::Function, ::String, ::Vararg{String,N}) at .\pkg\pkg.jl:258 in test(::String, ::Vararg{String,N}) at .\pkg\pkg.jl:258

julia>

rumipix commented 7 years ago

On Windows, creating file symlinks requires Administrator privileges; run cmd shell/julia as administrator

finmod commented 7 years ago

Running cmd shell/julia as Administrator was already done in the previous diagnostic.

Here is the outcome of cmd shell/julia. The error at model_coupling is the same as above. Also we have come down considerably down the test list to arrive at model_coupling.

Denis@Denis-M3800 MINGW64 ~/.julia/v0.5/Mads (master) $ git rm-symlinks Hardlink created for docs\Examples\bayesian_sampling\index.md <<===>> docs\Examples\bayesian_sampling......\examples\bayesian_sampling\bayesian_sampling.md Hardlink created for docs\Examples\bayesian_sampling\w01-bayes.png <<===>> docs\Examples\bayesian_sampling......\examples\bayesian_sampling\w01-bayes.png Hardlink created for docs\Examples\bayesian_sampling\w01-match.svg <<===>> docs\Examples\bayesian_sampling......\examples\bayesian_sampling\w01-match.svg Hardlink created for docs\Examples\bayesian_sampling\w01-posterior-1000-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\bayesian_sampling\w01-posterior-1000-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-posterior-source1_dx-1000-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\bayesian_sampling\w01-posterior-source1_dx-1000-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-posterior-source1_dy-1000-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\bayesian_sampling\w01-posterior-source1_dy-1000-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-posterior-source1_t0-1000-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\bayesian_sampling\w01-posterior-source1_t0-1000-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-posterior-source1_t1-1000-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\bayesian_sampling\w01-posterior-source1_t1-1000-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-posterior-source1_x-1000-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\bayesian_sampling\w01-posterior-source1_x-1000-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-posterior-source1_y-1000-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\bayesian_sampling\w01-posterior-source1_y-1000-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-prior-100-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\bayesian_sampling\w01-prior-100-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-prior-source1_dx-100-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\bayesian_sampling\w01-prior-source1_dx-100-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-prior-source1_dy-100-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\bayesian_sampling\w01-prior-source1_dy-100-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-prior-source1_t0-100-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\bayesian_sampling\w01-prior-source1_t0-100-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-prior-source1_t1-100-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\bayesian_sampling\w01-prior-source1_t1-100-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-prior-source1_x-100-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\bayesian_sampling\w01-prior-source1_x-100-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-prior-source1_y-100-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\bayesian_sampling\w01-prior-source1_y-100-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-problemsetup.svg <<===>> docs\Examples\bayesian_sampling......\examples\bayesian_sampling\w01-problemsetup.svg Hardlink created for docs\Examples\bigdt\source_termination\index.md <<===>> docs\Examples\bigdt\source_termination........\examples\bigdt\source_termination.md Hardlink created for docs\Examples\bigdt\source_termination\source_termination-problemsetup.png <<===>> docs\Examples\bigdt\source_termination........\examples\bigdt\source_termination-problemsetup.png Hardlink created for docs\Examples\bigdt\source_termination\source_termination-robustness-1000.png <<===>> docs\Examples\bigdt\source_termination........\examples\bigdt\source_termination-robustness-1000.png Hardlink created for docs\Examples\bigdt\source_termination\source_termination-robustness-zoom-1000.png <<===>> docs\Examples\bigdt\source_termination........\examples\bigdt\source_termination-robustness-zoom-1000.png Hardlink created for docs\Examples\bigdt\source_termination\source_termination.md <<===>> docs\Examples\bigdt\source_termination........\examples\bigdt\source_termination.md Hardlink created for docs\Examples\blind_source_separation\index.md <<===>> docs\Examples\blind_source_separation......\examples\blind_source_separation\blind_source_separation.md Hardlink created for docs\Examples\blind_source_separation\rand_mixed_signals.svg <<===>> docs\Examples\blind_source_separation......\examples\blind_source_separation\rand_mixed_signals.svg Hardlink created for docs\Examples\blind_source_separation\rand_original_sources.svg <<===>> docs\Examples\blind_source_separation......\examples\blind_source_separation\rand_original_sources.svg Hardlink created for docs\Examples\blind_source_separation\rand_unmixed_sources_nlopt.svg <<===>> docs\Examples\blind_source_separation......\examples\blind_source_separation\rand_unmixed_sources_nlopt.svg Hardlink created for docs\Examples\blind_source_separation\rand_unmixed_sources_nmf.svg <<===>> docs\Examples\blind_source_separation......\examples\blind_source_separation\rand_unmixed_sources_nmf.svg Hardlink created for docs\Examples\blind_source_separation\sig_mixed_signals.svg <<===>> docs\Examples\blind_source_separation......\examples\blind_source_separation\sig_mixed_signals.svg Hardlink created for docs\Examples\blind_source_separation\sig_original_sources.svg <<===>> docs\Examples\blind_source_separation......\examples\blind_source_separation\sig_original_sources.svg Hardlink created for docs\Examples\blind_source_separation\sig_reproduced_signals_nlopt.svg <<===>> docs\Examples\blind_source_separation......\examples\blind_source_separation\sig_reproduced_signals_nlopt.svg Hardlink created for docs\Examples\blind_source_separation\sig_reproduced_signals_nmf.svg <<===>> docs\Examples\blind_source_separation......\examples\blind_source_separation\sig_reproduced_signals_nmf.svg Hardlink created for docs\Examples\blind_source_separation\sig_unmixed_sources_nlopt.svg <<===>> docs\Examples\blind_source_separation......\examples\blind_source_separation\sig_unmixed_sources_nlopt.svg Hardlink created for docs\Examples\blind_source_separation\sig_unmixed_sources_nmf.svg <<===>> docs\Examples\blind_source_separation......\examples\blind_source_separation\sig_unmixed_sources_nmf.svg Hardlink created for docs\Examples\blind_source_separation\sin_mixed_signals.svg <<===>> docs\Examples\blind_source_separation......\examples\blind_source_separation\sin_mixed_signals.svg Hardlink created for docs\Examples\blind_source_separation\sin_original_sources.svg <<===>> docs\Examples\blind_source_separation......\examples\blind_source_separation\sin_original_sources.svg Hardlink created for docs\Examples\blind_source_separation\sin_reproduced_signals_nlopt.svg <<===>> docs\Examples\blind_source_separation......\examples\blind_source_separation\sin_reproduced_signals_nlopt.svg Hardlink created for docs\Examples\blind_source_separation\sin_reproduced_signals_nmf.svg <<===>> docs\Examples\blind_source_separation......\examples\blind_source_separation\sin_reproduced_signals_nmf.svg Hardlink created for docs\Examples\blind_source_separation\sin_unmixed_sources_nlopt.svg <<===>> docs\Examples\blind_source_separation......\examples\blind_source_separation\sin_unmixed_sources_nlopt.svg Hardlink created for docs\Examples\blind_source_separation\sin_unmixed_sources_nmf.svg <<===>> docs\Examples\blind_source_separation......\examples\blind_source_separation\sin_unmixed_sources_nmf.svg Hardlink created for docs\Examples\contamination\index.md <<===>> docs\Examples\contamination......\examples\contamination\contamination.md Hardlink created for docs\Examples\contamination\w01-all_wells-problemsetup.svg <<===>> docs\Examples\contamination......\examples\contamination\w01-all_wells-problemsetup.svg Hardlink created for docs\Examples\contamination\w01-bayes.png <<===>> docs\Examples\contamination......\examples\contamination\w01-bayes.png Hardlink created for docs\Examples\contamination\w01-w13a_w20a-calib-match.svg <<===>> docs\Examples\contamination......\examples\contamination\w01-w13a_w20a-calib-match.svg Hardlink created for docs\Examples\contamination\w01-w13a_w20a-init-match.svg <<===>> docs\Examples\contamination......\examples\contamination\w01-w13a_w20a-init-match.svg Hardlink created for docs\Examples\contamination\w01-w13a_w20a-posterior-1000-spaghetti.png <<===>> docs\Examples\contamination......\examples\contamination\w01-w13a_w20a-posterior-1000-spaghetti.png Hardlink created for docs\Examples\contamination\w01-w13a_w20a-prior-100-spaghetti.svg <<===>> docs\Examples\contamination......\examples\contamination\w01-w13a_w20a-prior-100-spaghetti.svg Hardlink created for docs\Examples\contamination\w01-w13a_w20a-problemsetup.svg <<===>> docs\Examples\contamination......\examples\contamination\w01-w13a_w20a-problemsetup.svg Hardlink created for docs\Examples\contamination\w13a-efast-main_effect.svg <<===>> docs\Examples\contamination......\examples\contamination\w13a-efast-main_effect.svg Hardlink created for docs\Examples\contamination\w13a-efast-total_effect.svg <<===>> docs\Examples\contamination......\examples\contamination\w13a-efast-total_effect.svg Hardlink created for docs\Examples\contamination\w13a-saltelli-main_effect.svg <<===>> docs\Examples\contamination......\examples\contamination\w13a-saltelli-main_effect.svg Hardlink created for docs\Examples\contamination\w13a-saltelli-total_effect.svg <<===>> docs\Examples\contamination......\examples\contamination\w13a-saltelli-total_effect.svg Hardlink created for docs\Examples\contamination\w20a-efast-main_effect.svg <<===>> docs\Examples\contamination......\examples\contamination\w20a-efast-main_effect.svg Hardlink created for docs\Examples\contamination\w20a-efast-total_effect.svg <<===>> docs\Examples\contamination......\examples\contamination\w20a-efast-total_effect.svg Hardlink created for docs\Examples\contamination\w20a-saltelli-main_effect.svg <<===>> docs\Examples\contamination......\examples\contamination\w20a-saltelli-main_effect.svg Hardlink created for docs\Examples\contamination\w20a-saltelli-total_effect.svg <<===>> docs\Examples\contamination......\examples\contamination\w20a-saltelli-total_effect.svg Hardlink created for docs\Examples\infogap\model_1_h_0.001.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_1_h_0.001.png Hardlink created for docs\Examples\infogap\model_1_h_0.01.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_1_h_0.01.png Hardlink created for docs\Examples\infogap\model_1_h_0.02.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_1_h_0.02.png Hardlink created for docs\Examples\infogap\model_1_h_0.05.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_1_h_0.05.png Hardlink created for docs\Examples\infogap\model_1_h_0.1.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_1_h_0.1.png Hardlink created for docs\Examples\infogap\model_1_h_0.2.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_1_h_0.2.png Hardlink created for docs\Examples\infogap\model_1_h_0.5.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_1_h_0.5.png Hardlink created for docs\Examples\infogap\model_1_h_1.0.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_1_h_1.0.png Hardlink created for docs\Examples\infogap\model_2_h_0.001.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_2_h_0.001.png Hardlink created for docs\Examples\infogap\model_2_h_0.01.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_2_h_0.01.png Hardlink created for docs\Examples\infogap\model_2_h_0.02.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_2_h_0.02.png Hardlink created for docs\Examples\infogap\model_2_h_0.05.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_2_h_0.05.png Hardlink created for docs\Examples\infogap\model_2_h_0.1.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_2_h_0.1.png Hardlink created for docs\Examples\infogap\model_2_h_0.2.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_2_h_0.2.png Hardlink created for docs\Examples\infogap\model_2_h_0.5.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_2_h_0.5.png Hardlink created for docs\Examples\infogap\model_2_h_1.0.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_2_h_1.0.png Hardlink created for docs\Examples\infogap\model_3_h_0.001.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_3_h_0.001.png Hardlink created for docs\Examples\infogap\model_3_h_0.01.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_3_h_0.01.png Hardlink created for docs\Examples\infogap\model_3_h_0.02.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_3_h_0.02.png Hardlink created for docs\Examples\infogap\model_3_h_0.05.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_3_h_0.05.png Hardlink created for docs\Examples\infogap\model_3_h_0.1.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_3_h_0.1.png Hardlink created for docs\Examples\infogap\model_3_h_0.2.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_3_h_0.2.png Hardlink created for docs\Examples\infogap\model_3_h_0.5.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_3_h_0.5.png Hardlink created for docs\Examples\infogap\model_3_h_1.0.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_3_h_1.0.png Hardlink created for docs\Examples\infogap\model_4_h_0.001.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_4_h_0.001.png Hardlink created for docs\Examples\infogap\model_4_h_0.01.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_4_h_0.01.png Hardlink created for docs\Examples\infogap\model_4_h_0.02.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_4_h_0.02.png Hardlink created for docs\Examples\infogap\model_4_h_0.05.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_4_h_0.05.png Hardlink created for docs\Examples\infogap\model_4_h_0.1.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_4_h_0.1.png Hardlink created for docs\Examples\infogap\model_4_h_0.2.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_4_h_0.2.png Hardlink created for docs\Examples\infogap\model_4_h_0.5.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_4_h_0.5.png Hardlink created for docs\Examples\infogap\model_4_h_1.0.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_4_h_1.0.png Hardlink created for docs\Examples\infogap\model_setup.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\model_setup.png Hardlink created for docs\Examples\infogap\opportuneness_vs_robustness.png <<===>> docs\Examples\infogap......\examples\model_analysis\infogap_results\opportuneness_vs_robustness.png Hardlink created for docs\Examples\ode\index.md <<===>> docs\Examples\ode......\examples\ode\ode.md Hardlink created for docs\Examples\ode\ode-bayes.png <<===>> docs\Examples\ode......\examples\ode\ode-bayes.png Hardlink created for docs\Examples\ode\ode-efast-385.svg <<===>> docs\Examples\ode......\examples\ode\ode-efast-385.svg Hardlink created for docs\Examples\ode\ode-eigenmatrix.png <<===>> docs\Examples\ode......\examples\ode\ode-eigenmatrix.png Hardlink created for docs\Examples\ode\ode-eigenvalues.png <<===>> docs\Examples\ode......\examples\ode\ode-eigenvalues.png Hardlink created for docs\Examples\ode\ode-match.png <<===>> docs\Examples\ode......\examples\ode\ode-match.png Hardlink created for docs\Examples\ode\ode-posterior-1000-spaghetti.png <<===>> docs\Examples\ode......\examples\ode\ode-posterior-1000-spaghetti.png Hardlink created for docs\Examples\ode\ode-posterior-k-1000-spaghetti.png <<===>> docs\Examples\ode......\examples\ode\ode-posterior-k-1000-spaghetti.png Hardlink created for docs\Examples\ode\ode-posterior-omega-1000-spaghetti.png <<===>> docs\Examples\ode......\examples\ode\ode-posterior-omega-1000-spaghetti.png Hardlink created for docs\Examples\ode\ode-prior-100-spaghetti.png <<===>> docs\Examples\ode......\examples\ode\ode-prior-100-spaghetti.png Hardlink created for docs\Examples\ode\ode-prior-k-100-spaghetti.png <<===>> docs\Examples\ode......\examples\ode\ode-prior-k-100-spaghetti.png Hardlink created for docs\Examples\ode\ode-prior-omega-100-spaghetti.png <<===>> docs\Examples\ode......\examples\ode\ode-prior-omega-100-spaghetti.png Hardlink created for docs\Examples\ode\ode-solution.svg <<===>> docs\Examples\ode......\examples\ode\ode-solution.svg Hardlink created for docs\Examples\setup.md <<===>> docs\Examples....\EXAMPLES.md Hardlink created for docs\Modules\Anasol.md <<===>> docs\Modules..\build\Anasol.md Hardlink created for docs\Modules\BIGUQ.md <<===>> docs\Modules..\build\BIGUQ.md Hardlink created for docs\Modules\Mads.md <<===>> docs\Modules..\build\Mads.md Hardlink created for docs\Modules\MetaProgTools.md <<===>> docs\Modules..\build\MetaProgTools.md Hardlink created for docs\Modules\ReusableFunctions.md <<===>> docs\Modules..\build\ReusableFunctions.md Hardlink created for docs\Modules\RobustPmap.md <<===>> docs\Modules..\build\RobustPmap.md Hardlink created for docs\acknowledgments.md <<===>> docs..\ACKNOWLEDGMENTS.md Hardlink created for docs\copying.md <<===>> docs..\COPYING.md Hardlink created for docs\functions.md <<===>> docs..\FUNCTIONS.md Hardlink created for docs\getting_started.md <<===>> docs..\GETTING_STARTED.md Hardlink created for docs\index.md <<===>> docs..\MADS.md Hardlink created for docs\installation.md <<===>> docs..\INSTALLATION.md Hardlink created for docs\model_coupling.md <<===>> docs..\MODEL_COUPLING.md Hardlink created for docs\readme.md <<===>> docs..\README.md Hardlink created for docs\test.md <<===>> docs..\TEST.md Hardlink created for examples\bayesian_sampling\internal-linearmodel.jl <<===>> examples\bayesian_sampling..\internal-linear-model\internal-linearmodel.jl Hardlink created for examples\bayesian_sampling\internal-linearmodel.mads <<===>> examples\bayesian_sampling..\internal-linear-model\internal-linearmodel.mads Hardlink created for examples\getting_started\madsjl.jl <<===>> examples\getting_started....\src\madsjl.jl Hardlink created for examples\gsl\internal-linearmodel.jl <<===>> examples\gsl..\internal-linear-model\internal-linearmodel.jl Hardlink created for examples\gsl\internal-linearmodel.mads <<===>> examples\gsl..\internal-linear-model\internal-linearmodel.mads Hardlink created for examples\model_analysis\models\internal-polynomial.jl <<===>> examples\model_analysis\models....\internal-polynomial-model\internal-polynomial.jl Hardlink created for examples\model_analysis\models\internal-polynomial.mads <<===>> examples\model_analysis\models....\internal-polynomial-model\internal-polynomial.mads Hardlink created for examples\model_coupling\external-jld-linearmodel.jl <<===>> examples\model_coupling..\external-linear-model\external-jld-linearmodel.jl Hardlink created for examples\model_coupling\external-jld.mads <<===>> examples\model_coupling..\external-linear-model\external-jld.mads Hardlink created for examples\model_coupling\external-yaml-linearmodel.jl <<===>> examples\model_coupling..\external-linear-model\external-yaml-linearmodel.jl Hardlink created for examples\model_coupling\external-yaml.mads <<===>> examples\model_coupling..\external-linear-model\external-yaml.mads Hardlink created for examples\model_coupling\internal-linearmodel.jl <<===>> examples\model_coupling..\internal-linear-model\internal-linearmodel.jl Hardlink created for examples\model_coupling\internal-linearmodel.mads <<===>> examples\model_coupling..\internal-linear-model\internal-linearmodel.mads Hardlink created for examples\montecarlo\internal-linearmodel.jl <<===>> examples\montecarlo..\internal-linear-model\internal-linearmodel.jl Hardlink created for examples\montecarlo\internal-linearmodel.mads <<===>> examples\montecarlo..\internal-linear-model\internal-linearmodel.mads Hardlink created for examples\optimization\external-ascii-linearmodel.jl <<===>> examples\optimization..\model_coupling\external-ascii-linearmodel.jl Hardlink created for examples\optimization\external-ascii.mads <<===>> examples\optimization..\model_coupling\external-ascii.mads Hardlink created for examples\optimization\external-jld-linearmodel.jl <<===>> examples\optimization..\external-linear-model\external-jld-linearmodel.jl Hardlink created for examples\optimization\external-jld.mads <<===>> examples\optimization..\external-linear-model\external-jld.mads Hardlink created for examples\optimization\external-yaml-linearmodel.jl <<===>> examples\optimization..\external-linear-model\external-yaml-linearmodel.jl Hardlink created for examples\optimization\external-yaml.mads <<===>> examples\optimization..\external-linear-model\external-yaml.mads Hardlink created for examples\optimization\internal-linearmodel+template.jl <<===>> examples\optimization..\model_coupling\internal-linearmodel+template.jl Hardlink created for examples\optimization\internal-linearmodel+template.mads <<===>> examples\optimization..\model_coupling\internal-linearmodel+template.mads Hardlink created for examples\optimization\internal-linearmodel-parameters.tpl <<===>> examples\optimization..\model_coupling\internal-linearmodel-parameters.tpl Hardlink created for examples\optimization\internal-linearmodel.jl <<===>> examples\optimization..\internal-linear-model\internal-linearmodel.jl Hardlink created for examples\optimization\internal-linearmodel.mads <<===>> examples\optimization..\internal-linear-model\internal-linearmodel.mads Hardlink created for examples\restart\external-jld-linearmodel.jl <<===>> examples\restart..\model_coupling\external-jld-linearmodel.jl Hardlink created for examples\restart\external-jld.mads <<===>> examples\restart..\model_coupling\external-jld.mads Hardlink created for examples\restart\internal-linearmodel.jl <<===>> examples\restart..\internal-linear-model\internal-linearmodel.jl Hardlink created for examples\restart\internal-linearmodel.mads <<===>> examples\restart..\internal-linear-model\internal-linearmodel.mads Hardlink created for examples\restart\w01-v01.mads <<===>> examples\restart\internal-linearmodel.mads Hardlink created for examples\sensitivity\internal-linearmodel.jl <<===>> examples\sensitivity..\internal-linear-model\internal-linearmodel.jl Hardlink created for examples\wells\w01.inst <<===>> examples\wells\w01-v5.inst

Denis@Denis-M3800 MINGW64 ~/.julia/v0.5/Mads (master) $

montyvesselinov commented 7 years ago

BTW, the symlinks are needed only if external simulator is applied. If you are using Julia to perform simulations symlinks are not needed.

montyvesselinov commented 7 years ago

I will test it again on MS Windows.

-monty

On Sun, Dec 18, 2016 at 12:03 PM, finmod notifications@github.com wrote:

Running cmd shell/julia as Administrator was already done in the previous diagnostic.

Here is the outcome of cmd shell/julia. The error at model_coupling is the same as above. Also we have come down considerably down the test list to arrive at model_coupling.

Denis@Denis-M3800 MINGW64 ~/.julia/v0.5/Mads (master) $ git rm-symlinks Hardlink created for docs\Examples\bayesian_sampling\index.md <<===>> docs\Examples\bayesian_sampling......\examples\bayesiansampling\bayesian sampling.md Hardlink created for docs\Examples\bayesian_sampling\w01-bayes.png <<===>> docs\Examples\bayesian_sampling......\examples\ bayesian_sampling\w01-bayes.png Hardlink created for docs\Examples\bayesian_sampling\w01-match.svg <<===>> docs\Examples\bayesian_sampling......\examples\ bayesian_sampling\w01-match.svg Hardlink created for docs\Examples\bayesian_sampling\w01-posterior-1000-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\ bayesian_sampling\w01-posterior-1000-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-posterior-source1_dx-1000-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\ bayesian_sampling\w01-posterior-source1_dx-1000-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-posterior-source1_dy-1000-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\ bayesian_sampling\w01-posterior-source1_dy-1000-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-posterior-source1_t0-1000-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\ bayesian_sampling\w01-posterior-source1_t0-1000-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-posterior-source1_t1-1000-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\ bayesian_sampling\w01-posterior-source1_t1-1000-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-posterior-source1_x-1000-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\ bayesian_sampling\w01-posterior-source1_x-1000-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-posterior-source1_y-1000-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\ bayesian_sampling\w01-posterior-source1_y-1000-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-prior-100-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\ bayesian_sampling\w01-prior-100-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-prior-source1_dx-100-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\ bayesian_sampling\w01-prior-source1_dx-100-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-prior-source1_dy-100-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\ bayesian_sampling\w01-prior-source1_dy-100-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-prior-source1_t0-100-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\ bayesian_sampling\w01-prior-source1_t0-100-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-prior-source1_t1-100-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\ bayesian_sampling\w01-prior-source1_t1-100-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-prior-source1_x-100-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\ bayesian_sampling\w01-prior-source1_x-100-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-prior-source1_y-100-spaghetti.png <<===>> docs\Examples\bayesian_sampling......\examples\ bayesian_sampling\w01-prior-source1_y-100-spaghetti.png Hardlink created for docs\Examples\bayesian_sampling\w01-problemsetup.svg <<===>> docs\Examples\bayesian_sampling......\examples\ bayesian_sampling\w01-problemsetup.svg Hardlink created for docs\Examples\bigdt\source_termination\index.md <<===>> docs\Examples\bigdt\source_termination........\examples\bigdt\ source_termination.md Hardlink created for docs\Examples\bigdt\source_termination\source_termination-problemsetup.png <<===>> docs\Examples\bigdt\source_termination........\examples\ bigdt\source_termination-problemsetup.png Hardlink created for docs\Examples\bigdt\sourcetermination\source termination-robustness-1000.png <<===>> docs\Examples\bigdt\source_ termination........\examples\bigdt\source_termination-robustness-1000.png Hardlink created for docs\Examples\bigdt\sourcetermination\source termination-robustness-zoom-1000.png <<===>> docs\Examples\bigdt\source_ termination........\examples\bigdt\source_termination- robustness-zoom-1000.png Hardlink created for docs\Examples\bigdt\sourcetermination\source termination.md <<===>> docs\Examples\bigdt\source_ termination........\examples\bigdt\source_termination.md Hardlink created for docs\Examples\blind_source_separation\index.md <<===>> docs\Examples\blind_source_separation......\examples\ blind_source_separation\blind_source_separation.md Hardlink created for docs\Examples\blindsource separation\rand_mixed_signals.svg <<===>> docs\Examples\blindsource separation......\examples\blind_source_separation\rand_mixed_signals.svg Hardlink created for docs\Examples\blind_source_separation\rand_original_sources.svg <<===>> docs\Examples\blind_source_separation......\examples\ blind_source_separation\rand_original_sources.svg Hardlink created for docs\Examples\blind_source_separation\rand_unmixed_sources_nlopt.svg <<===>> docs\Examples\blind_source_separation......\examples\ blind_source_separation\rand_unmixed_sources_nlopt.svg Hardlink created for docs\Examples\blind_source_separation\rand_unmixed_sources_nmf.svg <<===>> docs\Examples\blind_source_separation......\examples\ blind_source_separation\rand_unmixed_sources_nmf.svg Hardlink created for docs\Examples\blindsource separation\sig_mixed_signals.svg <<===>> docs\Examples\blindsource separation......\examples\blind_source_separation\sig_mixed_signals.svg Hardlink created for docs\Examples\blind_source_separation\sig_original_sources.svg <<===>> docs\Examples\blind_source_separation......\examples\ blind_source_separation\sig_original_sources.svg Hardlink created for docs\Examples\blind_source_separation\sig_reproduced_signals_nlopt.svg <<===>> docs\Examples\blind_source_separation......\examples\ blind_source_separation\sig_reproduced_signals_nlopt.svg Hardlink created for docs\Examples\blind_source_separation\sig_reproduced_signals_nmf.svg <<===>> docs\Examples\blind_source_separation......\examples\ blind_source_separation\sig_reproduced_signals_nmf.svg Hardlink created for docs\Examples\blind_source_separation\sig_unmixed_sources_nlopt.svg <<===>> docs\Examples\blind_source_separation......\examples\ blind_source_separation\sig_unmixed_sources_nlopt.svg Hardlink created for docs\Examples\blind_source_separation\sig_unmixed_sources_nmf.svg <<===>> docs\Examples\blind_source_separation......\examples\ blind_source_separation\sig_unmixed_sources_nmf.svg Hardlink created for docs\Examples\blindsource separation\sin_mixed_signals.svg <<===>> docs\Examples\blindsource separation......\examples\blind_source_separation\sin_mixed_signals.svg Hardlink created for docs\Examples\blind_source_separation\sin_original_sources.svg <<===>> docs\Examples\blind_source_separation......\examples\ blind_source_separation\sin_original_sources.svg Hardlink created for docs\Examples\blind_source_separation\sin_reproduced_signals_nlopt.svg <<===>> docs\Examples\blind_source_separation......\examples\ blind_source_separation\sin_reproduced_signals_nlopt.svg Hardlink created for docs\Examples\blind_source_separation\sin_reproduced_signals_nmf.svg <<===>> docs\Examples\blind_source_separation......\examples\ blind_source_separation\sin_reproduced_signals_nmf.svg Hardlink created for docs\Examples\blind_source_separation\sin_unmixed_sources_nlopt.svg <<===>> docs\Examples\blind_source_separation......\examples\ blind_source_separation\sin_unmixed_sources_nlopt.svg Hardlink created for docs\Examples\blind_source_separation\sin_unmixed_sources_nmf.svg <<===>> docs\Examples\blind_source_separation......\examples\ blind_source_separation\sin_unmixed_sources_nmf.svg Hardlink created for docs\Examples\contamination\index.md <<===>> docs\Examples\contamination......\examples\contamination\contamination.md Hardlink created for docs\Examples\contamination\w01-all_wells-problemsetup.svg <<===>> docs\Examples\contamination......\examples\contamination\ w01-all_wells-problemsetup.svg Hardlink created for docs\Examples\contamination\w01-bayes.png <<===>> docs\Examples\contamination......\examples\contamination\w01-bayes.png Hardlink created for docs\Examples\contamination\w01-w13a_w20a-calib-match.svg <<===>> docs\Examples\contamination......\examples\contamination\ w01-w13a_w20a-calib-match.svg Hardlink created for docs\Examples\contamination\w01-w13a_w20a-init-match.svg <<===>> docs\Examples\contamination......\examples\contamination\ w01-w13a_w20a-init-match.svg Hardlink created for docs\Examples\contamination\ w01-w13a_w20a-posterior-1000-spaghetti.png <<===>> docs\Examples\contamination......\examples\contamination\ w01-w13a_w20a-posterior-1000-spaghetti.png Hardlink created for docs\Examples\contamination\w01-w13a_w20a-prior-100-spaghetti.svg <<===>> docs\Examples\contamination......\examples\contamination\ w01-w13a_w20a-prior-100-spaghetti.svg Hardlink created for docs\Examples\contamination\w01-w13a_w20a-problemsetup.svg <<===>> docs\Examples\contamination......\examples\contamination\ w01-w13a_w20a-problemsetup.svg Hardlink created for docs\Examples\contamination\w13a-efast-main_effect.svg <<===>> docs\Examples\contamination......\examples\contamination\ w13a-efast-main_effect.svg Hardlink created for docs\Examples\contamination\w13a-efast-total_effect.svg <<===>> docs\Examples\contamination......\examples\contamination\ w13a-efast-total_effect.svg Hardlink created for docs\Examples\contamination\w13a-saltelli-main_effect.svg <<===>> docs\Examples\contamination......\examples\contamination\ w13a-saltelli-main_effect.svg Hardlink created for docs\Examples\contamination\w13a-saltelli-total_effect.svg <<===>> docs\Examples\contamination......\examples\contamination\ w13a-saltelli-total_effect.svg Hardlink created for docs\Examples\contamination\w20a-efast-main_effect.svg <<===>> docs\Examples\contamination......\examples\contamination\ w20a-efast-main_effect.svg Hardlink created for docs\Examples\contamination\w20a-efast-total_effect.svg <<===>> docs\Examples\contamination......\examples\contamination\ w20a-efast-total_effect.svg Hardlink created for docs\Examples\contamination\w20a-saltelli-main_effect.svg <<===>> docs\Examples\contamination......\examples\contamination\ w20a-saltelli-main_effect.svg Hardlink created for docs\Examples\contamination\w20a-saltelli-total_effect.svg <<===>> docs\Examples\contamination......\examples\contamination\ w20a-saltelli-total_effect.svg Hardlink created for docs\Examples\infogap\model_1_h_0.001.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_1_h_0.001.png Hardlink created for docs\Examples\infogap\model_1_h_0.01.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_1_h_0.01.png Hardlink created for docs\Examples\infogap\model_1_h_0.02.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_1_h_0.02.png Hardlink created for docs\Examples\infogap\model_1_h_0.05.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_1_h_0.05.png Hardlink created for docs\Examples\infogap\model_1_h_0.1.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_1_h_0.1.png Hardlink created for docs\Examples\infogap\model_1_h_0.2.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_1_h_0.2.png Hardlink created for docs\Examples\infogap\model_1_h_0.5.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_1_h_0.5.png Hardlink created for docs\Examples\infogap\model_1_h_1.0.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_1_h_1.0.png Hardlink created for docs\Examples\infogap\model_2_h_0.001.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_2_h_0.001.png Hardlink created for docs\Examples\infogap\model_2_h_0.01.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_2_h_0.01.png Hardlink created for docs\Examples\infogap\model_2_h_0.02.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_2_h_0.02.png Hardlink created for docs\Examples\infogap\model_2_h_0.05.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_2_h_0.05.png Hardlink created for docs\Examples\infogap\model_2_h_0.1.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_2_h_0.1.png Hardlink created for docs\Examples\infogap\model_2_h_0.2.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_2_h_0.2.png Hardlink created for docs\Examples\infogap\model_2_h_0.5.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_2_h_0.5.png Hardlink created for docs\Examples\infogap\model_2_h_1.0.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_2_h_1.0.png Hardlink created for docs\Examples\infogap\model_3_h_0.001.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_3_h_0.001.png Hardlink created for docs\Examples\infogap\model_3_h_0.01.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_3_h_0.01.png Hardlink created for docs\Examples\infogap\model_3_h_0.02.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_3_h_0.02.png Hardlink created for docs\Examples\infogap\model_3_h_0.05.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_3_h_0.05.png Hardlink created for docs\Examples\infogap\model_3_h_0.1.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_3_h_0.1.png Hardlink created for docs\Examples\infogap\model_3_h_0.2.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_3_h_0.2.png Hardlink created for docs\Examples\infogap\model_3_h_0.5.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_3_h_0.5.png Hardlink created for docs\Examples\infogap\model_3_h_1.0.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_3_h_1.0.png Hardlink created for docs\Examples\infogap\model_4_h_0.001.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_4_h_0.001.png Hardlink created for docs\Examples\infogap\model_4_h_0.01.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_4_h_0.01.png Hardlink created for docs\Examples\infogap\model_4_h_0.02.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_4_h_0.02.png Hardlink created for docs\Examples\infogap\model_4_h_0.05.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_4_h_0.05.png Hardlink created for docs\Examples\infogap\model_4_h_0.1.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_4_h_0.1.png Hardlink created for docs\Examples\infogap\model_4_h_0.2.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_4_h_0.2.png Hardlink created for docs\Examples\infogap\model_4_h_0.5.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_4_h_0.5.png Hardlink created for docs\Examples\infogap\model_4_h_1.0.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_4_h_1.0.png Hardlink created for docs\Examples\infogap\model_setup.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\model_setup.png Hardlink created for docs\Examples\infogap\opportuneness_vs_robustness.png <<===>> docs\Examples\infogap......\examples\model_analysis\ infogap_results\opportuneness_vs_robustness.png Hardlink created for docs\Examples\ode\index.md <<===>> docs\Examples\ode......\examples\ode\ode.md Hardlink created for docs\Examples\ode\ode-bayes.png <<===>> docs\Examples\ode......\examples\ode\ode-bayes.png Hardlink created for docs\Examples\ode\ode-efast-385.svg <<===>> docs\Examples\ode......\examples\ode\ode-efast-385.svg Hardlink created for docs\Examples\ode\ode-eigenmatrix.png <<===>> docs\Examples\ode......\examples\ode\ode-eigenmatrix.png Hardlink created for docs\Examples\ode\ode-eigenvalues.png <<===>> docs\Examples\ode......\examples\ode\ode-eigenvalues.png Hardlink created for docs\Examples\ode\ode-match.png <<===>> docs\Examples\ode......\examples\ode\ode-match.png Hardlink created for docs\Examples\ode\ode-posterior-1000-spaghetti.png <<===>> docs\Examples\ode......\examples\ode\ode-posterior- 1000-spaghetti.png Hardlink created for docs\Examples\ode\ode-posterior-k-1000-spaghetti.png <<===>> docs\Examples\ode......\examples\ode\ode-posterior-k- 1000-spaghetti.png Hardlink created for docs\Examples\ode\ode-posterior-omega-1000-spaghetti.png <<===>> docs\Examples\ode......\examples\ode\ode-posterior- omega-1000-spaghetti.png Hardlink created for docs\Examples\ode\ode-prior-100-spaghetti.png <<===>> docs\Examples\ode......\examples\ode\ode-prior-100-spaghetti.png Hardlink created for docs\Examples\ode\ode-prior-k-100-spaghetti.png <<===>> docs\Examples\ode......\examples\ode\ode-prior-k-100-spaghetti.png Hardlink created for docs\Examples\ode\ode-prior-omega-100-spaghetti.png <<===>> docs\Examples\ode......\examples\ode\ode-prior-omega- 100-spaghetti.png Hardlink created for docs\Examples\ode\ode-solution.svg <<===>> docs\Examples\ode......\examples\ode\ode-solution.svg Hardlink created for docs\Examples\setup.md <<===>> docs\Examples....\EXAMPLES.md Hardlink created for docs\Modules\Anasol.md <<===>> docs\Modules..\build\Anasol.md Hardlink created for docs\Modules\BIGUQ.md <<===>> docs\Modules..\build\BIGUQ.md Hardlink created for docs\Modules\Mads.md <<===>> docs\Modules..\build\Mads.md Hardlink created for docs\Modules\MetaProgTools.md <<===>> docs\Modules..\build\MetaProgTools.md Hardlink created for docs\Modules\ReusableFunctions.md <<===>> docs\Modules..\build\ReusableFunctions.md Hardlink created for docs\Modules\RobustPmap.md <<===>> docs\Modules..\build\RobustPmap.md Hardlink created for docs\acknowledgments.md <<===>> docs..\ACKNOWLEDGMENTS.md Hardlink created for docs\copying.md <<===>> docs..\COPYING.md Hardlink created for docs\functions.md <<===>> docs..\FUNCTIONS.md Hardlink created for docs\getting_started.md <<===>> docs..\GETTING_STARTED.md Hardlink created for docs\index.md <<===>> docs..\MADS.md Hardlink created for docs\installation.md <<===>> docs..\INSTALLATION.md Hardlink created for docs\model_coupling.md <<===>> docs..\MODEL_COUPLING.md Hardlink created for docs\readme.md <<===>> docs..\README.md Hardlink created for docs\test.md <<===>> docs..\TEST.md Hardlink created for examples\bayesian_sampling\internal-linearmodel.jl <<===>> examples\bayesian_sampling..\internal-linear-model\ internal-linearmodel.jl Hardlink created for examples\bayesian_sampling\internal-linearmodel.mads <<===>> examples\bayesian_sampling..\internal-linear-model\ internal-linearmodel.mads Hardlink created for examples\getting_started\madsjl.jl <<===>> examples\getting_started....\src\madsjl.jl Hardlink created for examples\gsl\internal-linearmodel.jl <<===>> examples\gsl..\internal-linear-model\internal-linearmodel.jl Hardlink created for examples\gsl\internal-linearmodel.mads <<===>> examples\gsl..\internal-linear-model\internal-linearmodel.mads Hardlink created for examples\model_analysis\models\internal-polynomial.jl <<===>> examples\model_analysis\models....\internal- polynomial-model\internal-polynomial.jl Hardlink created for examples\model_analysis\models\internal-polynomial.mads <<===>> examples\model_analysis\models....\internal- polynomial-model\internal-polynomial.mads Hardlink created for examples\model_coupling\external-jld-linearmodel.jl <<===>> examples\model_coupling..\external-linear-model\ external-jld-linearmodel.jl Hardlink created for examples\model_coupling\external-jld.mads <<===>> examples\model_coupling..\external-linear-model\external-jld.mads Hardlink created for examples\model_coupling\external-yaml-linearmodel.jl <<===>> examples\model_coupling..\external-linear-model\ external-yaml-linearmodel.jl Hardlink created for examples\model_coupling\external-yaml.mads <<===>> examples\model_coupling..\external-linear-model\external-yaml.mads Hardlink created for examples\model_coupling\internal-linearmodel.jl <<===>> examples\model_coupling..\internal-linear-model\ internal-linearmodel.jl Hardlink created for examples\model_coupling\internal-linearmodel.mads <<===>> examples\model_coupling..\internal-linear-model\ internal-linearmodel.mads Hardlink created for examples\montecarlo\internal-linearmodel.jl <<===>> examples\montecarlo..\internal-linear-model\internal-linearmodel.jl Hardlink created for examples\montecarlo\internal-linearmodel.mads <<===>> examples\montecarlo..\internal-linear-model\ internal-linearmodel.mads Hardlink created for examples\optimization\external-ascii-linearmodel.jl <<===>> examples\optimization..\model_coupling\external-ascii- linearmodel.jl Hardlink created for examples\optimization\external-ascii.mads <<===>> examples\optimization..\model_coupling\external-ascii.mads Hardlink created for examples\optimization\external-jld-linearmodel.jl <<===>> examples\optimization..\external-linear-model\ external-jld-linearmodel.jl Hardlink created for examples\optimization\external-jld.mads <<===>> examples\optimization..\external-linear-model\external-jld.mads Hardlink created for examples\optimization\external-yaml-linearmodel.jl <<===>> examples\optimization..\external-linear-model\ external-yaml-linearmodel.jl Hardlink created for examples\optimization\external-yaml.mads <<===>> examples\optimization..\external-linear-model\external-yaml.mads Hardlink created for examples\optimization\internal-linearmodel+template.jl <<===>> examples\optimization..\model_coupling\internal-linearmodel+ template.jl Hardlink created for examples\optimization\internal-linearmodel+template.mads <<===>> examples\optimization..\model_coupling\internal-linearmodel+ template.mads Hardlink created for examples\optimization\internal-linearmodel-parameters.tpl <<===>> examples\optimization..\model_coupling\internal-linearmodel- parameters.tpl Hardlink created for examples\optimization\internal-linearmodel.jl <<===>> examples\optimization..\internal-linear-model\ internal-linearmodel.jl Hardlink created for examples\optimization\internal-linearmodel.mads <<===>> examples\optimization..\internal-linear-model\ internal-linearmodel.mads Hardlink created for examples\restart\external-jld-linearmodel.jl <<===>> examples\restart..\model_coupling\external-jld-linearmodel.jl Hardlink created for examples\restart\external-jld.mads <<===>> examples\restart..\model_coupling\external-jld.mads Hardlink created for examples\restart\internal-linearmodel.jl <<===>> examples\restart..\internal-linear-model\internal-linearmodel.jl Hardlink created for examples\restart\internal-linearmodel.mads <<===>> examples\restart..\internal-linear-model\internal-linearmodel.mads Hardlink created for examples\restart\w01-v01.mads <<===>> examples\restart\internal-linearmodel.mads Hardlink created for examples\sensitivity\internal-linearmodel.jl <<===>> examples\sensitivity..\internal-linear-model\internal-linearmodel.jl Hardlink created for examples\wells\w01.inst <<===>> examples\wells\w01-v5.inst

Denis@Denis-M3800 MINGW64 ~/.julia/v0.5/Mads (master) $

— You are receiving this because you modified the open/close state. Reply to this email directly, view it on GitHub https://github.com/madsjulia/Mads.jl/issues/8#issuecomment-267839359, or mute the thread https://github.com/notifications/unsubscribe-auth/AFXxeNajvlNLVNY5OkXFn9ACMMshzsbxks5rJYOegaJpZM4LAxJT .

montyvesselinov commented 7 years ago

Uploaded a new version with more attempts to create the links if failure occurs. Try Mads.test("model_coupling") several times. Hope now it works.

finmod commented 7 years ago

Monty, Sorry to be such a nuisance but I guess that I am the only one giving Mads a good test on Windows.

The scoop is: Mads.test("model_coupling") and Mads.test("optimization") are still the ones failing with the usual error.

I have tried everything: several times Pkg.checkout("Mads"), Pkg.build(), Pkg.update(), the only two modules failing are the ones above. I even Pkg.rm() twice, Pkg.update(), Pkg.add() etc...it was originally failing at bayesian_sampling but after applying the git rm-symlinks it advanced further to model_coupling and failed.

If Mads.test() could pass these two modules.......

montyvesselinov commented 7 years ago

No problem. It is nice to find out what is the problem in this case. It is very strange. Can cut and paste the following in julia and tell me what you get:

"Create a symbolic link of all the files in a directory `dirsource` in a directory `dirtarget`"
function symlinkdirfiles(dirsource::String, dirtarget::String)
    for f in readdir(dirsource)
        symlinkdir(f, dirtarget)
    end
end

"Create a symbolic link of a file `filename` in a directory `dirtarget`"
function symlinkdir(filename::String, dirtarget::String)
    filenametarget = joinpath(dirtarget, filename)
    if !isfile(filenametarget)
        symlink(abspath(filename), filenametarget)
    end
end

mkdir("test-links")
symlinkdirfiles(Pkg.dir("Mads"), "test-links")
;ls -altr test-links
finmod commented 7 years ago

The outcome is:

"Create a symbolic link of all the files in a directory dirsource in a directory dirtarget" function symlinkdirfiles(dirsource::String, dirtarget::String) for f in readdir(dirsource) symlinkdir(f, dirtarget) end end

out[1] symlinkdirfiles

"Create a symbolic link of a file filename in a directory dirtarget" function symlinkdir(filename::String, dirtarget::String) filenametarget = joinpath(dirtarget, filename) if !isfile(filenametarget) symlink(abspath(filename), filenametarget) end end

out[2] symlinkdir

mkdir("test-links") symlinkdirfiles(Pkg.dir("Mads"), "test-links") ;ls -altr test-links

LoadError: SystemError (with test-links): mkdir: File exists while loading In[3], in expression starting on line 1

in #systemerror#51 at .\error.jl:34 [inlined] in (::Base.#kw##systemerror)(::Array{Any,1}, ::Base.#systemerror, ::Symbol, ::Bool) at .\:0 in mkdir(::String, ::UInt16) at .\file.jl:74 in mkdir(::String) at .\file.jl:69

montyvesselinov commented 7 years ago

Here it complains that "test-links" dir already exists.

can you delete "test-links" and run again?

are you using windows power shell, windows cmd, cygwin, or something else?

what version of windows are you using.

-monty

On Wed, Dec 21, 2016 at 12:25 PM, finmod notifications@github.com wrote:

The outcome is:

"Create a symbolic link of all the files in a directory dirsource in a directory dirtarget" function symlinkdirfiles(dirsource::String, dirtarget::String) for f in readdir(dirsource) symlinkdir(f, dirtarget) end end

out[1] symlinkdirfiles

"Create a symbolic link of a file filename in a directory dirtarget" function symlinkdir(filename::String, dirtarget::String) filenametarget = joinpath(dirtarget, filename) if !isfile(filenametarget) symlink(abspath(filename), filenametarget) end end

out[2] symlinkdir

mkdir("test-links") symlinkdirfiles(Pkg.dir("Mads"), "test-links") ;ls -altr test-links

LoadError: SystemError (with test-links): mkdir: File exists while loading In[3], in expression starting on line 1

in #systemerror#51 at .\error.jl:34 [inlined] in (::Base.#kw##systemerror)(::Array{Any,1}, ::Base.#systemerror, ::Symbol, ::Bool) at .:0 in mkdir(::String, ::UInt16) at .\file.jl:74 in mkdir(::String) at .\file.jl:69

— You are receiving this because you modified the open/close state. Reply to this email directly, view it on GitHub https://github.com/madsjulia/Mads.jl/issues/8#issuecomment-268616202, or mute the thread https://github.com/notifications/unsubscribe-auth/AFXxeGMhqXdlS5pAG-8dE990mcY9sH4fks5rKX0igaJpZM4LAxJT .

finmod commented 7 years ago

Same outcome. After deletion, the test-links folder is created by:

mkdir("test-links") symlinkdirfiles(Pkg.dir("Mads"), "test-links") ;ls -altr test-links

and then the same error message. The problem is with symlinkdirfiles(Pkg.dir("Mads"), "test-links") which seems to want to create "test-links" again when it has just been created by mkdir("test-links"). Something is redundant in the command or the path.

There is also the question of Administrator privileges: when mkdir is excluded then symlinkdirfiles requires Admin privileges.

My set up is Windows 10 with standard Julia v0.5 install.

montyvesselinov commented 7 years ago 
"Create a symbolic link of all the files in a directory `dirsource` in a directory `dirtarget`"
function symlinkdirfiles(dirsource::String, dirtarget::String)
    for f in readdir(dirsource)
        symlinkdir(f, dirtarget)
    end
end

"Create a symbolic link of a file `filename` in a directory `dirtarget`"
function symlinkdir(filename::String, dirtarget::String)
    filenametarget = joinpath(dirtarget, filename)
    @show filenametarget
    if !islink(filenametarget) && !isdir(filenametarget) && !isfile(filenametarget)
        symlink(abspath(filename), filenametarget)
    end
end

can you rerun using these?

finmod commented 7 years ago

Removing the test-links folder first.

"Create a symbolic link of all the files in a directory dirsource in a directory dirtarget" function symlinkdirfiles(dirsource::String, dirtarget::String) for f in readdir(dirsource) symlinkdir(f, dirtarget) end end

out1] symlinkdirfiles

"Create a symbolic link of a file filename in a directory dirtarget" function symlinkdir(filename::String, dirtarget::String) filenametarget = joinpath(dirtarget, filename) @show filenametarget if !islink(filenametarget) && !isdir(filenametarget) && !isfile(filenametarget) symlink(abspath(filename), filenametarget) end end

out[2] symlinkdir

mkdir("test-links") symlinkdirfiles(Pkg.dir("Mads"), "test-links") ;ls -altr test-links

filenametarget = "test-links\.git" WARNING: Note: on Windows, creating file symlinks requires Administrator privileges. LoadError: symlink: operation not permitted (EPERM) while loading In[3], in expression starting on line 2

in uv_error at .\libuv.jl:68 [inlined] in symlink(::String, ::String) at .\file.jl:454 in symlinkdir(::String, ::String) at .\In[2]:6 in symlinkdirfiles(::String, ::String) at .\In[1]:4

montyvesselinov commented 7 years ago

image

i justed tested it on win10; it seems to work.

finmod commented 7 years ago

Yes. This ln[3} now works.

ln[3] mkdir("test-links") symlinkdirfiles(Pkg.dir("Mads"), "test-links")

It has to find its way in the rest of Mads to run Mads.test("model_coupling") and Mads.test("optimization") smoothly.

This is for tomorrow for me. Thanks

montyvesselinov commented 7 years ago

i already pushed it in the Mads repo. Hope it is going to work. Thank you very much for your help.

finmod commented 7 years ago

SOLVED!!! INFO: Mads tests passed.

Thank you for your commitment to achieving parity in running Mads in both Windows and Ubuntu. This should be a great help in having Mads.jl better known and used.

Let me get on with running some of your examples to get a better understanding of what is being achieved here in the estimation of parameters and states of inverse problems.