It would be much easier for data analysts to access this tool if it would accept file formats readily exported from Seurat, Scanpy, or similar tools. Is there any plan to support h5ad or loom files?
For the Seurat 3 users out there, here is a snippet of R code to export a Seurat v3 object to 10X triplet format, which is a good workaround for now. This uses pipes from magrittr, objects from Seurat >=3, and sparse matrices from Matrix, but I think it has no other dependencies.
It would be much easier for data analysts to access this tool if it would accept file formats readily exported from Seurat, Scanpy, or similar tools. Is there any plan to support
h5ad
orloom
files?For the Seurat 3 users out there, here is a snippet of R code to export a Seurat v3 object to 10X triplet format, which is a good workaround for now. This uses pipes from
magrittr
, objects fromSeurat
>=3, and sparse matrices fromMatrix
, but I think it has no other dependencies.