actinn_predict.py -trs ./train_set.h5 -trl ./train_label.txt.gz -ts ./test_set.h5 -lr 0.0001 -ne 50 -ms 128 -pc True -op False
2021-02-06 20:06:19.986295: W tensorflow/stream_executor/platform/default/dso_loader.cc:60] Could not load dynamic library 'libcudart.so.11.0'; dlerror: libcudart.so.11.0: cannot open shared object file: No such file or directory; LD_LIBRARY_PATH: /usr/lib/cuda/include:/usr/lib/cuda/lib64:
2021-02-06 20:06:19.986322: I tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine.
Traceback (most recent call last):
File "/home/congxiao/envisoft/actinn_predict.py", line 313, in
train_set = pd.read_hdf(args.train_set, key="dge")
File "/usr/local/lib/python3.8/site-packages/pandas/io/pytables.py", line 399, in read_hdf
store = HDFStore(path_or_buf, mode=mode, errors=errors, kwargs)
File "/usr/local/lib/python3.8/site-packages/pandas/io/pytables.py", line 561, in init
self.open(mode=mode, kwargs)
File "/usr/local/lib/python3.8/site-packages/pandas/io/pytables.py", line 710, in open
self._handle = tables.open_file(self._path, self._mode, kwargs)
File "/home/congxiao/.local/lib/python3.8/site-packages/tables/file.py", line 315, in open_file
return File(filename, mode, title, root_uep, filters, kwargs)
File "/home/congxiao/.local/lib/python3.8/site-packages/tables/file.py", line 778, in init
self._g_new(filename, mode, **params)
File "tables/hdf5extension.pyx", line 492, in tables.hdf5extension.File._g_new
tables.exceptions.HDF5ExtError: HDF5 error back trace
File "H5F.c", line 509, in H5Fopen
unable to open file
File "H5Fint.c", line 1400, in H5F__open
unable to open file
File "H5Fint.c", line 1700, in H5F_open
unable to read superblock
File "H5Fsuper.c", line 411, in H5F__super_read
file signature not found
End of HDF5 error back trace
Unable to open/create file './train_set.h5'
I checked I have nividia installed in my ubuntu, I tried to update it, but it looks it doesn't work.
I'm not sure where it goes wrong.
Thank you!
actinn_predict.py -trs ./train_set.h5 -trl ./train_label.txt.gz -ts ./test_set.h5 -lr 0.0001 -ne 50 -ms 128 -pc True -op False 2021-02-06 20:06:19.986295: W tensorflow/stream_executor/platform/default/dso_loader.cc:60] Could not load dynamic library 'libcudart.so.11.0'; dlerror: libcudart.so.11.0: cannot open shared object file: No such file or directory; LD_LIBRARY_PATH: /usr/lib/cuda/include:/usr/lib/cuda/lib64: 2021-02-06 20:06:19.986322: I tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine. Traceback (most recent call last): File "/home/congxiao/envisoft/actinn_predict.py", line 313, in
train_set = pd.read_hdf(args.train_set, key="dge")
File "/usr/local/lib/python3.8/site-packages/pandas/io/pytables.py", line 399, in read_hdf
store = HDFStore(path_or_buf, mode=mode, errors=errors, kwargs)
File "/usr/local/lib/python3.8/site-packages/pandas/io/pytables.py", line 561, in init
self.open(mode=mode, kwargs)
File "/usr/local/lib/python3.8/site-packages/pandas/io/pytables.py", line 710, in open
self._handle = tables.open_file(self._path, self._mode, kwargs)
File "/home/congxiao/.local/lib/python3.8/site-packages/tables/file.py", line 315, in open_file
return File(filename, mode, title, root_uep, filters, kwargs)
File "/home/congxiao/.local/lib/python3.8/site-packages/tables/file.py", line 778, in init
self._g_new(filename, mode, **params)
File "tables/hdf5extension.pyx", line 492, in tables.hdf5extension.File._g_new
tables.exceptions.HDF5ExtError: HDF5 error back trace
File "H5F.c", line 509, in H5Fopen unable to open file File "H5Fint.c", line 1400, in H5F__open unable to open file File "H5Fint.c", line 1700, in H5F_open unable to read superblock File "H5Fsuper.c", line 411, in H5F__super_read file signature not found
End of HDF5 error back trace
Unable to open/create file './train_set.h5'
I checked I have nividia installed in my ubuntu, I tried to update it, but it looks it doesn't work. I'm not sure where it goes wrong. Thank you!