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mafreitas / tdf2mzml

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BioConda package #20

Open ypriverol opened 1 year ago

ypriverol commented 1 year ago

Dear @mafreitas :

Can you create a bioconda package for this tool? are you interested on it?

Regards Yasset

mafreitas commented 1 year ago

Great idea. Our plan is to first create a pip package for easy installation. I need to verify with Bruker if it is ok to include the SDK in a package outside this repository. For now, you can still install in conda as below.

pip install git+https://github.com/mafreitas/tdf2mzml

in the environment.yml you can include

- pip:
    - git+https://github.com/mafreitas/tdf2mzml
ypriverol commented 1 year ago

We have started to use the package in our quantms pipeline which we deploy automatically in our cluster with no manual process. I will wait for you to see if you can get the permission from Bruker. BTW, if you do the pypi package I can help creating the bioconda -> docker container and singularity container.

mafreitas commented 1 year ago

That would be great. I also requested the latest SDKs. I would be interested to learn more about your automated quantms pipeline deployment as we are looking at doing something similar.

ypriverol commented 1 year ago

ping me ypriverol@gmail.com we can talk