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magarveylab / prism-releases

PRISM source code public releases
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blastp.sh #2

Closed tomas-pluskal closed 7 years ago

tomas-pluskal commented 7 years ago

Hi,

Attempting to run the PRISM release version v. 2.1.5, it complains that blastp.sh is missing:

SEVERE: Error: couldn't locate script blastp.sh at filepath /lab/solexa_weng/Seq_data/Projects/Tomas_Pluskal/20170330_Panst_genome_PRISM/blast/blastp.sh

I have blastp installed, of course, but no .sh script. What parameters does the script expect and what is the output? We have a parallelized version of blastp that runs on our LSF cluster, can we used that?

Tomas

tomas-pluskal commented 7 years ago

I see it requires a few more scripts to run:

hmm/hmmsearch.sh motifs/fimo.sh orfs/prodigal.sh

It also complains about the "tests" folder, what is that for?

tomas-pluskal commented 7 years ago

Nevermind, I found the scripts in the git repository https://github.com/magarveylab/prism-releases/tree/master/prism/WebContent Sorry for the false alarm.