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magicDGS / ReadTools

A Universal Toolkit for Handling Sequence Data from Different Sequencing Platforms
https://magicdgs.github.io/ReadTools/
MIT License
6 stars 3 forks source link

Support FASTA files as read source #317

Open magicDGS opened 6 years ago

magicDGS commented 6 years ago

This reads won't have quality. This may be useful for some long-read sequencing technology.

magicDGS commented 6 years ago

We can use FastaSequenceFile from htsjdk, but maybe it will be a bit inefficient for to convert back and forth from ReferenceSequence to a read.