BarcodeDictionaryFactory should use picard version of TabbedTextFileWithHeaderParser

magicDGS / ReadTools

A Universal Toolkit for Handling Sequence Data from Different Sequencing Platforms

https://magicdgs.github.io/ReadTools/

MIT License

6 stars 3 forks source link

BarcodeDictionaryFactory should use picard version of TabbedTextFileWithHeaderParser #369

Closed magicDGS closed 6 years ago

magicDGS commented 6 years ago

The BarcodeDictionaryFactory class uses GATK's TabbedTextFileWithHeaderParser (and related classes), but this was a port of a picard class which was removed when GATK because they include the picard.jar in 4.0.0.0. To update, we have two options:

Add picard as a dependency and change usages
Wait until update, as part of the update