Using SRA support from htsjdk

magicDGS / ReadTools

A Universal Toolkit for Handling Sequence Data from Different Sequencing Platforms

https://magicdgs.github.io/ReadTools/

MIT License

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Using SRA support from htsjdk #38

Open magicDGS opened 8 years ago

magicDGS commented 8 years ago

We could benefit from downloading and formatting SRA accessions provided as input, to normalize also public available data. Exploring the SRA handling from htsjdk will help to improve it.

magicDGS commented 7 years ago

This could be implemented as a SourceHandler, but it requires that the libraries for handle SRA should be downloaded. Because of the new design, just by implementing this new handler will allow to use the SRA support in every tool that use RTDataSource.