magicDGS / ReadTools

A Universal Toolkit for Handling Sequence Data from Different Sequencing Platforms
https://magicdgs.github.io/ReadTools/
MIT License
6 stars 3 forks source link

Implement StatFunction interface #446

Closed magicDGS closed 6 years ago

magicDGS commented 6 years ago

In addition, it adds:

Closes #438

codecov[bot] commented 6 years ago

Codecov Report

Merging #446 into master will decrease coverage by 0.035%. The diff coverage is 92.308%.

Impacted file tree graph

@@              Coverage Diff               @@
##             master      #446       +/-   ##
==============================================
- Coverage     93.23%   93.195%   -0.035%     
- Complexity      833       894       +61     
==============================================
  Files            81        89        +8     
  Lines          2319      2410       +91     
  Branches        254       259        +5     
==============================================
+ Hits           2162      2246       +84     
- Misses          120       126        +6     
- Partials         37        38        +1
Impacted Files Coverage Δ Complexity Δ
...ools/utils/read/stats/PairEndReadStatFunction.java 100% <100%> (ø) 2 <2> (?)
...ils/read/stats/pairstat/PairIntegerTagCounter.java 100% <100%> (ø) 10 <10> (?)
.../readtools/utils/read/stats/StatFunctionUtils.java 100% <100%> (ø) 2 <2> (?)
...ils/read/stats/singlestat/ContainIndelCounter.java 50% <50%> (ø) 2 <2> (?)
.../read/stats/singlestat/ContainSoftclipCounter.java 50% <50%> (ø) 3 <3> (?)
...icdgs/readtools/utils/read/stats/StatFunction.java 66.667% <66.667%> (ø) 3 <3> (?)
...icdgs/readtools/utils/math/RelationalOperator.java 92.857% <92.857%> (ø) 16 <16> (?)
...read/stats/pairstat/PairIntegerTagListCounter.java 97.826% <97.826%> (ø) 23 <23> (?)
... and 6 more