magicDGS / ReadTools

A Universal Toolkit for Handling Sequence Data from Different Sequencing Platforms
https://magicdgs.github.io/ReadTools/
MIT License
6 stars 3 forks source link

Implement GEM-mappability reader #480

Closed magicDGS closed 6 years ago

magicDGS commented 6 years ago

Includes

Part of #207

codecov[bot] commented 6 years ago

Codecov Report

Merging #480 into master will decrease coverage by 0.292%. The diff coverage is 87.407%.

Impacted file tree graph

@@              Coverage Diff               @@
##              master     #480       +/-   ##
==============================================
- Coverage     93.412%   93.12%   -0.292%     
- Complexity       991     1042       +51     
==============================================
  Files             95       99        +4     
  Lines           2641     2776      +135     
  Branches         284      299       +15     
==============================================
+ Hits            2467     2585      +118     
- Misses           133      145       +12     
- Partials          41       46        +5
Impacted Files Coverage Δ Complexity Δ
...utils/mappability/gem/GemMappabilityException.java 100% <100%> (ø) 5 <5> (?)
...ls/utils/mappability/gem/GemMappabilityHeader.java 58.333% <58.333%> (ø) 12 <12> (?)
...ls/utils/mappability/gem/GemMappabilityRecord.java 90% <90%> (ø) 6 <6> (?)
...ls/utils/mappability/gem/GemMappabilityReader.java 98.765% <98.765%> (ø) 28 <28> (?)