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magicDGS / ReadTools

A Universal Toolkit for Handling Sequence Data from Different Sequencing Platforms
https://magicdgs.github.io/ReadTools/
MIT License
6 stars 3 forks source link

Upgrade GATK to 4.0.6.0 and htsjdk to 2.16.0 #487

Closed magicDGS closed 5 years ago

magicDGS commented 5 years ago

Includes:

codecov[bot] commented 5 years ago

Codecov Report

Merging #487 into master will decrease coverage by 0.044%. The diff coverage is 75%.

Impacted file tree graph

@@              Coverage Diff               @@
##             master      #487       +/-   ##
==============================================
- Coverage     93.12%   93.076%   -0.044%     
+ Complexity     1042      1040        -2     
==============================================
  Files            99        99               
  Lines          2776      2773        -3     
  Branches        299       299               
==============================================
- Hits           2585      2581        -4     
- Misses          145       146        +1     
  Partials         46        46
Impacted Files Coverage Δ Complexity Δ
src/main/java/org/magicdgs/readtools/Main.java 81.818% <0%> (-2.557%) 14 <0> (ø)
...gicdgs/readtools/utils/read/ReadWriterFactory.java 92.373% <100%> (-0.25%) 39 <3> (-2)