codecov[bot]
commented
5 years ago Codecov Report
Merging #491 into master will decrease coverage by
0.12%. The diff coverage is84.615%.
@@ Coverage Diff @@
## master #491 +/- ##
==============================================
- Coverage 93.076% 92.956% -0.12%
- Complexity 1040 1056 +16
==============================================
Files 99 102 +3
Lines 2773 2825 +52
Branches 299 301 +2
==============================================
+ Hits 2581 2626 +45
- Misses 146 153 +7
Partials 46 46| Impacted Files | Coverage Δ | Complexity Δ | |
|---|---|---|---|
| ...ls/cmd/programgroups/MappabiltityProgramGroup.java | 0% <0%> (ø) |
0 <0> (?) |
|
| ...n/java/org/magicdgs/readtools/RTHelpConstants.java | 88.372% <100%> (+0.277%) |
13 <0> (ø) |
:arrow_down: |
| ...ols/tools/mappability/gem/GemMappabilityToBed.java | 88.571% <88.571%> (ø) |
9 <9> (?) |
|
| ...eadtools/tools/mappability/gem/GemScoreMethod.java | 92.308% <92.308%> (ø) |
6 <6> (?) |
|
| ...ls/utils/mappability/gem/GemMappabilityRecord.java | 100% <0%> (+10%) |
7% <0%> (+1%) |
:arrow_up: |
New experimental tool to perform conversion between GEM-mappability and BED-graph format. This tool includes also an scoring method switch, to convert the range of number of mappings (n) to an unique value. Current scoring methods are minimum/maximum/middle. In the future, this will be extended to score also the "mappability" sensu stricto (1/n).
This commit also adds a new program group for mappability-related tools.
Part of #207