ReadsToDistmap: do not require maxReadLength

magicDGS / ReadTools

A Universal Toolkit for Handling Sequence Data from Different Sequencing Platforms

https://magicdgs.github.io/ReadTools/

MIT License

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ReadsToDistmap: do not require maxReadLength #508

Open robmaz opened 5 years ago

robmaz commented 5 years ago

-maxReadLength appears to be a required option, but why?

magicDGS commented 5 years ago

Can you provide more information? I need the command line that you use and which error was produced after running it. Thanks!

magicDGS commented 5 years ago

By the way, it isn't an argument in the ReadsToDistmap, but an argument of the ReadLengthReadFilter.

As an optional filter for the trim/filter pipeline on uploading, if you specify --readFilter ReadLengthReadFilter you should also provide --maxReadLength to select the maximum-length to keep on uploading.