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magicDGS
/
ReadTools
A Universal Toolkit for Handling Sequence Data from Different Sequencing Platforms
https://magicdgs.github.io/ReadTools/
MIT License
6
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3
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Clarify usage of DownloadDistmapResult noRemoveTaskProgramGroup
#434
magicDGS
closed
6 years ago
2
Fix jekyll warnings (documentation)
#433
magicDGS
closed
6 years ago
2
Fix README typo
#432
magicDGS
closed
6 years ago
1
Add classpath documentation
#431
magicDGS
closed
6 years ago
1
Add entries to CHANGELOG since last release
#430
magicDGS
closed
6 years ago
2
Specify the agile workflow for ReadTools
#429
magicDGS
opened
6 years ago
0
Document how to run with a custom classpath for using plugins
#428
magicDGS
closed
6 years ago
0
Improve description of --noRemoveTaskProgramGroup
#427
magicDGS
closed
6 years ago
0
Improve Open Source repository documentation
#426
magicDGS
closed
6 years ago
1
Setup vulnerability check
#425
magicDGS
opened
6 years ago
0
Port TagByWindow from private repository (or only statistic)
#424
magicDGS
closed
6 years ago
4
Allow help folders instead of all pages in the root (jekyll)
#423
magicDGS
opened
6 years ago
0
Update doc ruby dependencies due to security issues
#422
magicDGS
closed
6 years ago
1
Add CI testing for MacOS
#421
magicDGS
opened
6 years ago
3
Create our own default stringency instead of relying on GATK's
#420
magicDGS
opened
6 years ago
1
Add validation stringency to QualityEncodingDetector
#419
magicDGS
closed
6 years ago
2
Exclude junit from all gradle configuration
#418
magicDGS
closed
6 years ago
1
Add validation stringency argument to QualityEncodingDetector
#417
magicDGS
closed
6 years ago
0
Create a docker container for ReadTools
#416
magicDGS
opened
6 years ago
0
Add to every release a zip file with docs
#415
magicDGS
opened
6 years ago
2
Create a bundle for ReadTools similar to GATK's one
#414
magicDGS
opened
6 years ago
0
Generate bash-completion file with Barclay
#413
magicDGS
opened
6 years ago
0
security concern with distmap download
#412
robmaz
closed
6 years ago
3
Support other compression algorithms for FASTQ/Distmap data
#411
magicDGS
opened
6 years ago
1
Should we add an argument for set the replication in HDFS
#410
magicDGS
opened
6 years ago
1
Handle compression for HDFS with Hadoop compression codecs
#409
magicDGS
closed
6 years ago
1
Fix license in MANIFEST failing in OSX
#408
magicDGS
closed
6 years ago
1
BAM output: add PP: tag to @PG header
#407
robmaz
opened
6 years ago
1
Add HadoopUtils for containing Hadoop related functionality
#406
magicDGS
closed
6 years ago
2
TrimAdapters support for distmap upload
#405
robmaz
closed
6 years ago
4
tfq support for distmap upload
#404
robmaz
opened
6 years ago
12
4mc support for distmap upload
#403
robmaz
closed
6 years ago
17
Add missing downloadable jar in webpage
#402
magicDGS
closed
6 years ago
1
Release 1.2.1
#401
magicDGS
closed
6 years ago
1
Update CHANGELOG with bug fix
#400
magicDGS
closed
6 years ago
2
Add tests for DownloadDistmapResult header PG with different CL
#399
magicDGS
opened
6 years ago
1
Remove PG tag in records while DownloadDistmapResult drops PG headers
#398
magicDGS
closed
6 years ago
2
Separate tests in DownloadDistmapResultIntegrationTest for cluster/local
#397
magicDGS
opened
6 years ago
0
DownloadDistmapResult does not handle correctly PG in records
#396
magicDGS
closed
6 years ago
4
Add downloads information to README and documentation
#395
magicDGS
closed
6 years ago
1
Leave mapper info with DownloadDistmapResult
#394
robmaz
closed
6 years ago
7
Add update for CHANGELOG.md in scripts/prepare_release
#393
magicDGS
closed
6 years ago
1
Release 1.2.0
#392
magicDGS
closed
6 years ago
1
Update CHANGELOG
#391
magicDGS
closed
6 years ago
1
Update manuscript reference
#390
magicDGS
closed
6 years ago
1
Fix ReadReaderFactory.setReferenceSequence
#389
magicDGS
closed
6 years ago
1
Move QualityEncodingDetector to DiagnosticsAndQCProgramGroup (placeholder)
#388
magicDGS
closed
6 years ago
1
Fix argument documentation breaking table if comming from javadoc
#387
magicDGS
closed
6 years ago
2
Upgrade HTSJDK to 2.13.2
#386
magicDGS
closed
6 years ago
1
Update CHANGELOG
#385
magicDGS
closed
6 years ago
1
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