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magicDGS / popgenlib

Population Genetics Java Library
MIT License
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Implement Pool-Seq correction for nucleotide diversity #19

Open magicDGS opened 7 years ago

magicDGS commented 7 years ago

As defined in Kofler et al. (2010). To assess concordance with PoPoolation, we ported the tests from the perl code.

Closes #9

magicDGS commented 7 years ago

If you are able to review, another one for you @AnnaMariaL

codecov[bot] commented 7 years ago

Codecov Report

Merging #19 into master will increase coverage by 0.608%. The diff coverage is 97.561%.

Impacted file tree graph

@@               Coverage Diff               @@
##              master       #19       +/-   ##
===============================================
+ Coverage     95.604%   96.212%   +0.608%     
- Complexity        41        60       +19     
===============================================
  Files              4         5        +1     
  Lines             91       132       +41     
  Branches           5         6        +1     
===============================================
+ Hits              87       127       +40     
- Misses             4         5        +1
Impacted Files Coverage Δ Complexity Δ
...opgenlib/diversity/NucleotideDiversityPoolSeq.java 97.561% <97.561%> (ø) 19 <19> (?)
magicDGS commented 6 years ago

@AnnaMariaL - reminder that we will re-activate this repository this year. Can you have a look to the other correction factor (you've already check the one for pi, but not for Watterson's)?