Although the output sequences will vary in length, an option for output a sequence with them will add new usage to this tool. There are only several things to take into account:
Implementation in #14 will be tricky for implement this behavior.
Another option for output same length sequences could be provided. Either add N nucleotides for the samples without the indel, or output it in an alignment different format.
Although the output sequences will vary in length, an option for output a sequence with them will add new usage to this tool. There are only several things to take into account: