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magicDGS / thaplv

Tools for Haploid/Haplotype VCFs
BSD 3-Clause "New" or "Revised" License
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LD components #33

Closed magicDGS closed 8 years ago

magicDGS commented 8 years ago

This is a temporary solution for the LD decay tool, because it should be changed by a new and cleaner implementation.

codecov-io commented 8 years ago

Current coverage is 73.689% (diff: 50.992%)

Merging #33 into master will decrease coverage by 10.129%

@@             master        #33   diff @@
==========================================
  Files            37         44     +7   
  Lines           791       1144   +353   
  Methods           0          0          
  Messages          0          0          
  Branches        122        180    +58   
==========================================
+ Hits            663        843   +180   
- Misses          103        265   +162   
- Partials         25         36    +11
Diff Coverage File Path
0% new ...a/org/magicdgs/thaplv/tools/ld/engine/LDbinning.java
6% new ...a/org/magicdgs/thaplv/utils/stats/LengthBinning.java
••• 33% new .../java/org/magicdgs/thaplv/utils/stats/StatUtils.java
•••••• 66% new ...va/org/magicdgs/thaplv/utils/stats/RunningStats.java
•••••• 66% new .../magicdgs/thaplv/utils/stats/popgen/LDfunctions.java
••••••• 75% new ...va/org/magicdgs/thaplv/haplotypes/light/SNPpair.java
••••••• 77% new .../magicdgs/thaplv/haplotypes/light/LightGenotype.java

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