LDdecay outputs all the SNP pairs computed

magicDGS / thaplv

Tools for Haploid/Haplotype VCFs

BSD 3-Clause "New" or "Revised" License

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LDdecay outputs all the SNP pairs computed #45

Open magicDGS opened 7 years ago

magicDGS commented 7 years ago

Apart of only output LD, we should allow one option for output single SNP statistics. Because this file is huge, we can work on a binary format to be loaded by another tool or just a text file but allowing gzip.

It would be nice if we can sort the file and make it indexable too.

magicDGS commented 7 years ago

This should be an switch option (false by default).