Minor allele frequency for exclude SNPs on the LD decay computation is not required with the algorithm implemented now (based on rmax2 thresholds already account for frequency). Nevertheless, it would be nice to allow the use of this threshold, as other software include it to remoce low frequency variants.
Minor allele frequency for exclude SNPs on the LD decay computation is not required with the algorithm implemented now (based on rmax2 thresholds already account for frequency). Nevertheless, it would be nice to allow the use of this threshold, as other software include it to remoce low frequency variants.