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magicDGS / thaplv

Tools for Haploid/Haplotype VCFs
BSD 3-Clause "New" or "Revised" License
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Removed DONT_CHECK in favor of CHECK_ONLY #49

Closed magicDGS closed 8 years ago

magicDGS commented 8 years ago

Closes #9

codecov-io commented 8 years ago

Current coverage is 83.127% (diff: 80.000%)

Merging #49 into master will increase coverage by 0.100%

@@             master        #49   diff @@
==========================================
  Files            49         50     +1   
  Lines          1361       1375    +14   
  Methods           0          0          
  Messages          0          0          
  Branches        220        223     +3   
==========================================
+ Hits           1130       1143    +13   
- Misses          180        181     +1   
  Partials         51         51
Diff Coverage File Path
••••••• 70% new ...lv/haplotypes/model/CheckOnlyHaplotypeConverter.java
•••••••••• 100% ...rc/main/java/org/magicdgs/thaplv/tools/GetFasta.java
•••••••••• 100% ...ctions/HaplotypeModelNoPloidyArgumentCollection.java
•••••••••• 100% .../main/java/org/magicdgs/thaplv/tools/ld/LDdecay.java
•••••••••• 100% ...entcollections/HaplotypeModelArgumentCollection.java
•••••••••• 100% .../broadinstitute/hellbender/engine/HaploidWalker.java
•••••••••• 100% ...ions/HaplotypeModelWithPloidyArgumentCollection.java
•••••••••• 100% ...main/java/org/magicdgs/thaplv/tools/ibd/IBDTool.java
•••••••••• 100% ...ava/org/magicdgs/thaplv/tools/ConvertHaplotypes.java
•••••••••• 100% ...thaplv/cmd/programgroups/ConversionProgramGroup.java

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