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magikker
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TreeHouse-Private
TreeHouse development.
GNU General Public License v3.0
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Clustering/grouping by taxa
#46
magikker
opened
11 years ago
0
The rand Index
#45
magikker
closed
11 years ago
2
Define a relationship algebra
#44
magikker
opened
11 years ago
0
Identify a general graphical system for TreeHouse vizualizations
#43
magikker
opened
11 years ago
7
When printing treesets contiguous trees ought to be printed as ranges
#42
magikker
opened
11 years ago
0
Display heatmap
#41
magikker
closed
11 years ago
4
randomly sampled tree sets
#40
magikker
closed
11 years ago
1
Function to return trees based on whether they got unique bipartitions from the rest of the set
#39
magikker
opened
11 years ago
0
The Bipartition table shouldn't allocate memory for weighs on unweighed trees
#38
magikker
opened
11 years ago
0
Bipartition class ought to handle inverse bipartitions
#37
magikker
opened
11 years ago
0
PQLSymbol needs a == operator.
#36
magikker
opened
11 years ago
0
Compute the k-tet similarity between two trees
#35
magikker
opened
11 years ago
0
a = {12.33} should give type error.... does wierd things.
#34
magikker
opened
11 years ago
0
'a[0]' doesn't work when 'a' is a vector of treesets
#33
magikker
closed
11 years ago
1
Build a k-tet consensus tree.
#32
magikker
opened
11 years ago
0
Medium Dataset needed
#31
magikker
closed
11 years ago
0
Rename all consensus user functions to consen_XXX()
#30
magikker
closed
11 years ago
0
Multidimensional Scaling (MDS)
#29
magikker
opened
11 years ago
0
Majority Shared Quartets
#28
magikker
closed
11 years ago
0
Strictly Shared Quartets
#27
magikker
closed
11 years ago
0
Expose quartets
#26
magikker
closed
11 years ago
2
Compute the NNI neighborhood for an input tree
#25
magikker
opened
11 years ago
0
Compute the NNI distance between two trees
#24
magikker
opened
11 years ago
0
PQLSymbol should support a vector of treesets
#23
magikker
closed
11 years ago
2
Possible code overlap HashTableSearch.cc & SearchFunctions.cc
#22
jaHoltz
closed
11 years ago
1
is_compat and non-truncated bitstrings
#21
magikker
closed
11 years ago
0
Implement Code For Test in TreeHouse
#20
magikker
opened
11 years ago
0
Silhouette (cluster quality metric)
#19
magikker
closed
11 years ago
10
Adam's Consensus
#18
magikker
opened
11 years ago
0
Need way to pass bipartitions to and from the commandline
#17
magikker
opened
11 years ago
5
Quartets implied by a bipartition
#16
magikker
closed
11 years ago
1
Distance to Root
#15
magikker
closed
11 years ago
0
Average Distance Between Taxa
#14
magikker
closed
11 years ago
0
Average Ancestral Distance
#13
magikker
closed
11 years ago
0
src/bin build setup
#12
magikker
opened
11 years ago
0
Functions on the commandline always expect some input
#11
magikker
opened
11 years ago
0
Highlight bipartitions in the Graphical tree display
#10
magikker
opened
11 years ago
0
Clustering method
#9
magikker
opened
11 years ago
24
Tree Shape Measures
#8
magikker
opened
11 years ago
0
Maximum agreement subtree
#7
magikker
opened
11 years ago
0
Distance based Tree search
#6
magikker
opened
11 years ago
1
Consensus resolution rate
#5
magikker
closed
11 years ago
0
Search based on clade size
#4
magikker
closed
11 years ago
0
Remove Most Global Variables.
#3
magikker
closed
11 years ago
2
Give bipartitions their own class
#2
magikker
closed
11 years ago
0
Unique Bipartition
#1
magikker
closed
11 years ago
0