Remote server compilation error

[eschlaf2]

Hello, I get the following errors when I run ./compile_components.sh on a remote server. I have nodejs and qt5 loaded as modules and fftw is installed locally. I don't have root access.

Any help you can give is greatly appreciated!!

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Project MESSAGE: Enabling mdaconvert Project MESSAGE: Enabling mda Project MESSAGE: Enabling mountainprocess Project MESSAGE: Enabling mountainsort Project MESSAGE: Enabling prv Project MESSAGE: Enabling mountainsort2 Project MESSAGE: Enabling mountainsort3 Project MESSAGE: Enabling mountainview Project MESSAGE: Enabling mountaincompare Project MESSAGE: Enabling spikeview1 Reading /project/ecog/emily/mountainlab/cpp/mlcommon/src/mlcommon.pro Reading /project/ecog/emily/mountainlab/cpp/mlconfig/src/mlconfig.pro Reading /project/ecog/emily/mountainlab/cpp/mdaconvert/src/mdaconvert.pro Reading /project/ecog/emily/mountainlab/cpp/mda/src/mda.pro Reading /project/ecog/emily/mountainlab/cpp/mountainprocess/src/mountainprocess.pro Reading /project/ecog/emily/mountainlab/cpp/mountainsort/src/mountainsort.pro Reading /project/ecog/emily/mountainlab/cpp/prv/src/prv.pro Reading /project/ecog/emily/mountainlab/packages/mountainsort2/src/mountainsort2.pro Reading /project/ecog/emily/mountainlab/packages/mountainsort3/src/mountainsort3.pro Reading /project/ecog/emily/mountainlab/cpp/mvcommon/src/mvcommon.pro Reading /project/ecog/emily/mountainlab/cpp/mountainview/src/mountainview.pro Reading /project/ecog/emily/mountainlab/cpp/mountaincompare/src/mountaincompare.pro Reading /project/ecog/emily/mountainlab/packages/spikeview1/src/spikeview1.pro Project MESSAGE: Enabling mdaconvert Project MESSAGE: Enabling mda Project MESSAGE: Enabling mountainprocess Project MESSAGE: Enabling mountainsort Project MESSAGE: Enabling prv Project MESSAGE: Enabling mountainsort2 Project MESSAGE: Enabling mountainsort3 Project MESSAGE: Enabling mountainview Project MESSAGE: Enabling mountaincompare Project MESSAGE: Enabling spikeview1 sha1sum: cpp/mountainprocess/bin/mountainprocess: No such file or directory Building with 1 parallel jobs cd cpp/mlcommon/src/ && ( test -e Makefile.mlcommon || /share/pkg/qt/5.4.2/install/bin/qmake /project/ecog/emily/mountainlab/cpp/mlcommon/src/mlcommon.pro -o Makefile.mlcommon ) && make -f Makefile.mlcommon make[1]: Entering directory /project/ecog/emily/mountainlab/cpp/mlcommon/src' g++ -c -pipe -O2 -fPIC -std=c++0x -Wall -W -D_REENTRANT -DUSE_REMOTE_READ_MDA -DQT_NO_DEBUG -DQT_NETWORK_LIB -DQT_CORE_LIB -I. -I../include -I../include/mda -I../include/cachemanager -I../include/taskprogress -I../include/mlnetwork -I../include/componentmanager -I/share/pkg/qt/5.4.2/install/include -I/share/pkg/qt/5.4.2/install/include/QtNetwork -I/share/pkg/qt/5.4.2/install/include/QtCore -I../build -I/share/pkg/qt/5.4.2/install/mkspecs/linux-g++ -o ../build/mlcommon.o mlcommon.cpp In file included from mlcommon.cpp:9:0: ../include/taskprogress/taskprogress.h:178:19: error: ISO C++ forbids declaration of 'Q_ENUM' with no type [-fpermissive] Q_ENUM(LogType) ^ ../include/taskprogress/taskprogress.h:178:19: error: expected ';' at end of member declaration mlcommon.cpp: In function 'double MLCompute::sum(const QVector<double>&)': mlcommon.cpp:406:12: error: 'accumulate' is not a member of 'std' return std::accumulate(X.constBegin(), X.constEnd(), 0.0); ^~~ mlcommon.cpp: In function 'double MLCompute::stdev(const QVector<double>&)': mlcommon.cpp:419:21: error: 'inner_product' is not a member of 'std' double sumsqr = std::inner_product(X.constBegin(), X.constEnd(), X.constBegin(), 0.0); ^~~ mlcommon.cpp:420:18: error: 'accumulate' is not a member of 'std' double sum = std::accumulate(X.constBegin(), X.constEnd(), 0.0); ^~~ mlcommon.cpp: In function 'double MLCompute::dotProduct(const QVector<double>&, const QVector<double>&)': mlcommon.cpp:433:12: error: 'inner_product' is not a member of 'std' return std::inner_product(X1.constBegin(), X1.constEnd(), X2.constBegin(), 0.0); ^~~ mlcommon.cpp: In function 'double MLCompute::dotProduct(const QVector<float>&, const QVector<float>&)': mlcommon.cpp:445:12: error: 'inner_product' is not a member of 'std' return std::inner_product(X1.constBegin(), X1.constEnd(), X2.constBegin(), 0.0); ^~~ mlcommon.cpp: In function 'double MLCompute::dotProduct(bigint, const double*, const double*)': mlcommon.cpp:480:12: error: 'inner_product' is not a member of 'std' return std::inner_product(X1, X1 + N, X2, 0.0); ^~~ mlcommon.cpp: In function 'double MLCompute::dotProduct(bigint, const float*, const float*)': mlcommon.cpp:486:12: error: 'inner_product' is not a member of 'std' return std::inner_product(X1, X1 + N, X2, 0.0); ^~~ mlcommon.cpp: In function 'double MLCompute::sum(bigint, const double*)': mlcommon.cpp:498:12: error: 'accumulate' is not a member of 'std' return std::accumulate(X, X + N, 0.0); ^~~ mlcommon.cpp: In function 'double MLCompute::sum(bigint, const float*)': mlcommon.cpp:679:12: error: 'accumulate' is not a member of 'std' return std::accumulate(X, X + N, 0.0); ^~~ make[1]: *** [../build/mlcommon.o] Error 1 make[1]: Leaving directory/project/ecog/emily/mountainlab/cpp/mlcommon/src' make: *** [sub-cpp-mlcommon-src-mlcommon-pro-make_first-ordered] Error 2 Problem in compilation.

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[magland]

what branch are you on?

[eschlaf2]

ms3

On Nov 10, 2017, at 5:38 PM, Jeremy Magland notifications@github.com wrote:

what branch are you on?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or mute the thread.

[wysota]

Please run gcc --version (note the two dashes) and post the output.

[eschlaf2]

It's version 6.2.0. I did 'make clean' and then tried with 7.2 as well and got the following. compile_gcc7.txt

[wysota]

Try newer (5.5+) Qt version if you can. If not or if it doesn't work, we'll try something different.

[eschlaf2]

We are still working on getting Qt 5.5+ on the cluster here (I am told that newer versions of Qt require CentOS 7 and we have CentOS 6). In the meantime, the program is running in a local virtual environment and it's working well so far. I'll update if we get it working on the cluster. Thanks for your help!!