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magland / mountainlab

spike sorting software
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NameError: name 'widgets' is not defined where running mountainsort example in Jupyter lab #212

Closed Tousin1 closed 5 years ago

Tousin1 commented 5 years ago

Hello @magland , I am working on the lastest version of mountainsort when I came across this problem:

NameError Traceback (most recent call last)

in 2 with Pipeline: 3 #ironclust_sort_dataset(dataset_dir=dsdir,output_dir=output_dir,adjacency_radius=-1,detect_threshold=3) ----> 4 ms4_sort_dataset(dataset_dir=dsdir,output_dir=output_dir,adjacency_radius=-1,detect_threshold=3) ~/anaconda3/envs/mountainlab/lib/python3.6/site-packages/mountainlab_pytools/mlproc/mlproc_impl.py in __exit__(self, type, value, traceback) 33 Global['current_client']=self._client 34 def __exit__(self, type, value, traceback): ---> 35 self._client.run() 36 Global['current_client']=None 37 ~/anaconda3/envs/mountainlab/lib/python3.6/site-packages/mountainlab_pytools/mlproc/mlclient.py in run(self) 185 #self._job_monitor.widget().clearJobs() 186 --> 187 self._status_out=widgets.Output() 188 display(self._status_out) 189 self._last_status_string='' NameError: name 'widgets' is not defined I know this is trying to call multiple modules in python from mountainlab evironment but i have no idea what the variable "widgets" means. Once again, I'm trying to test out the examples laid out on this website: https://github.com/flatironinstitute/mountainsort_examples/blob/master/jupyter_examples/001_ms4_jupyter_example/ms4_jupyter_example.ipynb. Could you help me without me manipulating the already written code modules? Thanks, Tousin
Alkohost commented 5 years ago

Please check the issue https://github.com/flatironinstitute/mountainsort_examples/issues/14