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magland / msdrift

mountainsort drift package for mountainlab
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problem with ms drift install #1

Open rtraghavan opened 5 years ago

rtraghavan commented 5 years ago

I also am having trouble getting msdrift to work. I did the following,

  1. I cloned the repo and created a symbolic link at /home/$user/anaconda3/envs/mountainsort/etc/mountainlab/packages.
  2. I then tried to execute ml-list-processors and received the following error (see below). Any idea of how to proceed

Traceback (most recent call last): File "/home/user/anaconda3/envs/mountainsort/etc/mountainlab/packages/msdrift/python/drift.py", line 12, in import p_join_segments File "/data/user/repos/labMS4/msdrift/python/p_join_segments.py", line 8, in from basic.p_compute_templates import compute_templates_helper File "/home/user/anaconda3/envs/mlab/etc/mountainlab/packages/ml_pyms/basic/init.py", line 6, in from .p_bandpass_filter import * File "/home/user/anaconda3/envs/mlab/etc/mountainlab/packages/ml_pyms/basic/p_bandpass_filter.py", line 16, in import bandpass_filter_cpp as cpp ImportError: /home/user/anaconda3/envs/mountainsort/lib/python3.6/site-packages/bandpass_filter_cpp.cpython-36m-x86_64-linux-gnu.so: undefined symbol: GOMP_parallel

vjtiznado commented 5 years ago

Hi, could you solve the problem? I have exactly the same issue. I just installed mountainsort on my Mac following the updated instructions and after that I tried to add msdrift and I got this. I have to say that one month ago I successfully added msdrift on a linux machine, and following the same steps now I couldn't. I don't know if something was changed since or if is it a Mac issue