magland / sortingview

Web app for viewing results of ephys spike sorting
Apache License 2.0
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cannot import sortingview #199

Closed khl02007 closed 2 years ago

khl02007 commented 2 years ago

@magland on version 0.8.6 possibly related to #196

File ~/repos/spyglass/src/spyglass/spikesorting/sortingview.py:2, in <module>
      1 import datajoint as dj
----> 2 import sortingview as sv
      4 from ..common.common_lab import LabTeam, LabMember
      5 from .sortingview_helper_fn import (_add_metrics_to_sorting_in_workspace,
      6                                     _create_spikesortingview_workspace,
      7                                     _set_workspace_permission)

File ~/miniconda3/envs/spyglass/lib/python3.8/site-packages/sortingview/__init__.py:11, in <module>
      9 from .load_extractors.copy_recording_extractor import copy_recording_extractor, upload_recording_extractor
     10 from .load_extractors.copy_sorting_extractor import copy_sorting_extractor, upload_sorting_extractor
---> 11 from .load_extractors.save_recording import save_recording

File ~/miniconda3/envs/spyglass/lib/python3.8/site-packages/sortingview/load_extractors/save_recording.py:3, in <module>
      1 from typing import Any
      2 import spikeinterface as si
----> 3 from .h5extractors.h5recordingextractorv1 import H5RecordingExtractorV1
      6 def save_recording(R: si.BaseRecording, *, format: str, filename: str, dtype: Any):
      7     if format == 'h5_v1':

File ~/miniconda3/envs/spyglass/lib/python3.8/site-packages/sortingview/load_extractors/h5extractors/h5recordingextractorv1.py:6, in <module>
      3 import spikeinterface as si
      4 import spikeextractors as se
----> 6 from .TimeseriesModel_Hdf5.TimeseriesModel_Hdf5 import TimeseriesModel_Hdf5, prepare_timeseries_hdf5_from_recording, set_geom_on_recording
      9 class H5RecordingExtractorV1(se.RecordingExtractor):
     10     extractor_name = 'H5RecordingExtractorV1'

ModuleNotFoundError: No module named 'sortingview.load_extractors.h5extractors.TimeseriesModel_Hdf5'
magland commented 2 years ago

Another missing init.py. Should be fixed in 0.8.7