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magnitov
/
pentad
A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.
MIT License
13
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Rabl configuration
#16
PengfeiInTuebingen
opened
9 months ago
3
Log2 scale
#15
katikoshak
closed
11 months ago
2
Compartment strength between A and B compartments
#14
katikoshak
opened
1 year ago
2
How to define short- and long-range interactions in this tool
#13
hanshanmengqi
opened
1 year ago
1
error: unrecognized arguments: comp_signal hic_matrix_pca1.bedgraph
#12
yermekaitenov
opened
1 year ago
1
Problem installing pentads with conda
#11
rlisenhart
opened
1 year ago
24
hg19.100kb.windows.bed
#10
PengfeiInTuebingen
closed
2 years ago
2
get_pentads_trans.py fails to work well based on cooltools(v0.5.1)
#9
Alexlsy
closed
2 years ago
1
Add comp strength in trans and by distances
#8
Phocavitulina
closed
3 years ago
0
Add compartment strength calculation
#7
Phocavitulina
closed
3 years ago
0
Check chromosome names concordance
#6
magnitov
closed
2 years ago
0
Add comparing of two pentads
#5
Phocavitulina
closed
3 years ago
0
.mcool usage
#4
Phocavitulina
closed
3 years ago
0
Change eigenvector input to 'file_name::column_name'
#3
Phocavitulina
closed
3 years ago
1
adding pentad_dist.py and output saving in JSON
#2
Phocavitulina
closed
4 years ago
0
Добавил pentad_trans.py pentad_cis.py
#1
Phocavitulina
closed
4 years ago
0