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magnusdv / pedtools

Tools for working with pedigrees in R
GNU General Public License v3.0
23 stars 3 forks source link

Problem installing with `build_vignettes = TRUE` #22

Closed thoree closed 5 years ago

thoree commented 5 years ago

Installation failed just now iff I asked for the vignette:

devtools::install_github("magnusdv/pedtools", build_vignettes = TRUE, force = TRUE)

> Downloading GitHub repo magnusdv/pedtools@master

>

>

checking for file 'C:\Users\theg\AppData\Local\Temp\RtmpkVIyn5\remotes2fe447ce73ab\magnusdv-pedtools-93add0e/DESCRIPTION' ...

v checking for file 'C:\Users\theg\AppData\Local\Temp\RtmpkVIyn5\remotes2fe447ce73ab\magnusdv-pedtools-93add0e/DESCRIPTION'

>

v checking DESCRIPTION meta-information

>

E creating vignettes (8.4s)

> pandoc.exe: <>

> Error: processing vignette 'pedtools.Rmd' failed with diagnostics:

> pandoc document conversion failed with error 1

> Execution halted

>

> Error: Failed to install 'pedtools' from GitHub:

> System command error, exit status: 1, stdout + stderr:

> E> * checking for file 'C:\Users\theg\AppData\Local\Temp\RtmpkVIyn5\remotes2fe447ce73ab\magnusdv-pedtools-93add0e/DESCRIPTION' ... OK

> E> * preparing 'pedtools':

> E> * checking DESCRIPTION meta-information ... OK

> E> * installing the package to build vignettes

> E> * creating vignettes ... ERROR

> E> pandoc.exe: <>

> E> Error: processing vignette 'pedtools.Rmd' failed with diagnostics:

> E> pandoc document conversion failed with error 1

> E> Execution halted

Created on 2019-08-11 by the reprex package (v0.3.0)

magnusdv commented 5 years ago

Wild guess: Do you have the package kableExtra installed? If not, could you install it and try again?

thoree commented 5 years ago

Thanks - fine with kableExtra.