How do I get rid of the black part as a result of svs file Mask with image size (125074, 88592)?

[JaeHyeok-2]

I want to make a heat map up to the masked part.. The upper right and lower left areas are masked in black as follows: I want to run create_heatmap.py without processing the mask, how can I solve it?

[Eirfaan]

I too have the same issue

[fedshyvana]

please verify that you're using pixman > 0.38 (e.g. 0.40). upgrading to pixman 0.40.0 should solve the issue - this can be done via conda.

[JaeHyeok-2]

@fedshyvana pixman version is already 0.40 .... but the problem remains