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mahmoodlab / CLAM

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
http://clam.mahmoodlab.org
GNU General Public License v3.0
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About parameters in process_list.autogen.csv #231

Closed syy-create closed 4 months ago

syy-create commented 4 months ago

The effect is very good when slicing using createPatches'fp.py. But when I switch to other types of slices, such as TIF or NDPI, the effect may deteriorate. I have reviewed the previous issues and found that it is necessary to adjust the parameters of processlist.autogen.csv to improve the quality of slicing. What other parameters should be adjusted to improve slice quality? ![B`8V%HZ7{M3Q7EX)7 4{{K](https://github.com/mahmoodlab/CLAM/assets/59799671/920b4cdf-55e9-45dc-9697-c027dd0a9679)

fedshyvana commented 4 months ago

Hi, you can refer to custom-default-segmentation-parameters for explanation of key parameters.