mahmoodlab / CLAM

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
http://clam.mahmoodlab.org
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Segmentation parameters for WSI with partially black background #242

Closed Fel1xJulian closed 2 months ago

Fel1xJulian commented 2 months ago

Hi,

is there a set of ready-to-use segmentation parameters available that successfully segments WSIs with a partially black background? Right now the mask is right at the border between black and light pixels. The black background is a result of the necessary conversion from czi to tiff.

Screenshot 2024-04-22 at 12 04 36